Locus 1743

Sequence ID 3L_DroMel_CAF1
Location 5,041,083 – 5,041,203
Length 120
Max. P 0.965590
window2687

overview

Window 7

Location 5,041,083 – 5,041,203
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.67
Mean single sequence MFE -30.90
Consensus MFE -30.90
Energy contribution -30.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 1.00
SVM decision value 1.58
SVM RNA-class probability 0.965590
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5041083 120 - 23771897
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90)
>DroSec_CAF1 247551 120 - 1
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90)
>DroSim_CAF1 268413 120 - 1
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90)
>DroEre_CAF1 250999 120 - 1
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90)
>DroYak_CAF1 257368 120 - 1
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUAUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90)
>consensus
CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA
.....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... (-30.90 = -30.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:02 2006