Locus 1738

Sequence ID 3L_DroMel_CAF1
Location 5,032,869 – 5,032,963
Length 94
Max. P 0.652362
window2677

overview

Window 7

Location 5,032,869 – 5,032,963
Length 94
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 82.27
Mean single sequence MFE -27.83
Consensus MFE -16.72
Energy contribution -16.55
Covariance contribution -0.17
Combinations/Pair 1.12
Mean z-score -2.28
Structure conservation index 0.60
SVM decision value 0.25
SVM RNA-class probability 0.652362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5032869 94 - 23771897
UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUACUGUUGCUUUUGG--UUUCGUUAUUGCCGCCGGU
.((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).))))))(((--(..((....))..)))).. ( -27.50)
>DroSec_CAF1 239468 94 - 1
UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUGG--UUUCGUUAUUGCCGCUGGU
.((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).)))))).((--(.........)))...... ( -26.10)
>DroSim_CAF1 260339 96 - 1
UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUCGGUUUUCGUUAUUGCCGCUGGU
.((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).)))))).((((..........))))..... ( -27.20)
>DroEre_CAF1 242817 81 - 1
UGGAGCA------------------CAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGC-UUUUG--UGUCGUU------------
.((((((------------------(((.((.((((...((((((..((........))...)))))).....)))).))))).)))-)))..--.......------------ ( -22.40)
>DroYak_CAF1 248660 96 - 1
UGGAGCA----------------CACAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGUUGCUGUUGCGUUUCG--UUUCGUUAUUGCCGCUGCU
.(((((.----------------(((((.(((((((...((((((..((........))...)))))).....)))))))))).)).)))))(--(..((.......))..)). ( -25.80)
>DroAna_CAF1 250012 111 - 1
UGGGGCGCUGCUUGGCAGCCAAACGCAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGUUGCCGUAACUGUUGG--CAUUGUUAUUGCCGCUGG-
.(.((((((....))).(((((..((((((((.((((((.....)))))).))))))))...((((...((((((....))))))))))))))--).........))).)...- ( -38.00)
>consensus
UGGAGCA__________________CAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUGG__UUUCGUUAUUGCCGCUGGU
.(.((((..................(((((((.((((((.....)))))).))))))).((((((((.....)))))))).)))).)........................... (-16.72 = -16.55 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:53 2006