| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,009,402 – 5,009,496 |
| Length | 94 |
| Max. P | 0.985126 |
| Location | 5,009,402 – 5,009,496 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 96.43 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -17.88 |
| Energy contribution | -18.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5009402 94 + 23771897 AUCUGUUCAUUCAUCGGUGUGUAAACAUCUUUUUAGAUCCACUUUUCGCAACUUUCUUGUGGCAGUUUCCAACA---UCCUGCAGUUUGCCUGCACC ...............(((((((((((((((....))))........(((((.....)))))((((..(.....)---..)))).))))))..))))) ( -19.10) >DroSec_CAF1 229843 94 + 1 AUCUGUUCAUUCAUCGGUGUGUAAACAUCUUUCUAGAUCCACUUUUCGCAACUUUCUUGUGGCAGUUUCCAACA---UCCUGCAGUUUGCCUGCACC ...............(((((((((((((((....))))........(((((.....)))))((((..(.....)---..)))).))))))..))))) ( -19.10) >DroSim_CAF1 250711 94 + 1 AUCUGUUCAUUCAUCGGUGUGUAAACAUCUUUCUAGAUCCACUUUUCGCAACUUUCUUGUGGCAGUUUCCAACA---UCCUGCAGUUUGCCUGCACC ...............(((((((((((((((....))))........(((((.....)))))((((..(.....)---..)))).))))))..))))) ( -19.10) >DroEre_CAF1 233095 94 + 1 AUCUGUUCAUUCAUCGGUGUGUAAACAUCUCUCUAGAUCCACUUUACGCAACUUUCUUGUGGCAGUUUCCCACA---UCCUGCAGUUUGCCUGCACC ...............(((((((((((....................(((((.....)))))((((..(.....)---..)))).))))))..))))) ( -19.20) >DroYak_CAF1 238563 97 + 1 AUCUGUUCAUUCAUCGGUGUGUAAACAUCUUUUUAGAUCCACUUUUCGCAACUUUCUUGUGGCAGUUUCCAACAGUUUCCUGCAGUUCGCCUGCACC ..(((((........(((((....)))))......((...(((..((((((.....)))))).))).)).))))).....(((((.....))))).. ( -16.60) >consensus AUCUGUUCAUUCAUCGGUGUGUAAACAUCUUUCUAGAUCCACUUUUCGCAACUUUCUUGUGGCAGUUUCCAACA___UCCUGCAGUUUGCCUGCACC ...............(((((((((((((((....))))........(((((.....)))))((((..............)))).))))))..))))) (-17.88 = -18.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:46 2006