Locus 173

Sequence ID 3L_DroMel_CAF1
Location 527,932 – 528,033
Length 101
Max. P 0.609627
window247

overview

Window 7

Location 527,932 – 528,033
Length 101
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 75.58
Mean single sequence MFE -33.62
Consensus MFE -14.00
Energy contribution -14.28
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.82
Structure conservation index 0.42
SVM decision value 0.15
SVM RNA-class probability 0.609627
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 527932 101 + 23771897
CUUC----------A-CACUUCCCUCAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUUGAUUGG-AGGGGGAGGGGUGAGGCUUACUGC
((((----------(-(.((((((((...((((((((-----...(-((.....)))..))))))))......((((((....)))))).....-.)))))))).))))))........ ( -33.10)
>DroSec_CAF1 2161 100 + 1
CUUC----------A-CACUGCCC-CAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC-GGGGGGAGGGGUGAGGCUAACUGC
((((----------(-(.((.(((-(...((((((((-----...(-((.....)))..))))))))..(((.((((...........))))))-))))).))..))))))........ ( -30.70)
>DroEre_CAF1 2172 100 + 1
CCUC----------UGCAUUUCCC-CAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC-C-GGGGAGGGGGGAGGCUUACUGC
((((----------(.(.((((((-(...((((((((-----...(-((.....)))..))))))))...((.((((...........))))))-.-)))))))).)))))........ ( -30.50)
>DroYak_CAF1 2257 111 + 1
CCUCCCUCUCCUUCGUCAUUUCCC-CGAGGGUUUUCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGCCGUUGGC-CAGGGGAGGGGUGCAGCUUACUGC
..((((((((((..((((((((((-....(((((...-----....-))))).......))))))((((((........)))))).....))))-.)))))))))).((((....)))) ( -33.80)
>DroAna_CAF1 3620 102 + 1
CCCU----------UCCCCUUCCC-CUUCCACUUCCCACUUGAUGCAAAAUGAUUUAAAGAGAAAUUGUUGCACAACUUUAACGAU--GGUGCCACGGGGGAGGGGGAAGGU----GGG
.(((----------((((((((((-((..((((((....(((.(((((...(((((......))))).)))))))).......)).--))))....))))))))))))))).----... ( -40.00)
>consensus
CCUC__________A_CACUUCCC_CAUGGGUUUCCU_____AUGU_AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC_CGGGGGAGGGGUGAGGCUUACUGC
..................((((((.(...((((((((.....(((......))).....))))))))((((........))))..............)))))))............... (-14.00 = -14.28 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006