| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,999,479 – 4,999,594 |
| Length | 115 |
| Max. P | 0.643751 |
| Location | 4,999,479 – 4,999,594 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.09 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -33.33 |
| Energy contribution | -32.67 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4999479 115 - 23771897 GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGUGGGUGGUUCAGUUCGCUUUC-----AUGUAGAUGAGCCACCGGCAGACAA (((.......)))((((((....((((((.....).))))).......(((((....((((((((..((((..(......)..))))..)-----.))))))))))))))))))...... ( -39.90) >DroSec_CAF1 220093 115 - 1 GUAUAAAUCUUGCGCUGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGUGGGUGGUUCAGUUCGCUUUC-----AUGUAGAUGAGCCACCGGCAGACAA (((.......)))((((((....((((((.....).))))).......(((((....((((((((..((((..(......)..))))..)-----.))))))))))))))))))...... ( -37.70) >DroSim_CAF1 239873 115 - 1 GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGUGGGUGGUUCAGUUCGCUUUC-----AUGUAGAUGAGCCACCGGCAGACAA (((.......)))((((((....((((((.....).))))).......(((((....((((((((..((((..(......)..))))..)-----.))))))))))))))))))...... ( -39.90) >DroEre_CAF1 223338 115 - 1 GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGUGGGUGGCUCAGUUCGCUUUC-----AUGUAGAUGAGCCACCGGCAGACAA (((.......)))((((((....((((((.....).))))).......(((((....((((((((..((((..(......)..))))..)-----.))))))))))))))))))...... ( -39.90) >DroYak_CAF1 228259 115 - 1 GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACGGGGGGUGGGUGGCUCAGUUCGCUUUC-----AUGUAGAUGAGCCACCGGCAGACAA (((.......)))((((((....((((((.....).))))).......(((((....((((((((..((((..(......)..))))..)-----.))))))))))))))))))...... ( -39.20) >DroAna_CAF1 230441 119 - 1 GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGCGGGGGUGUGAGCU-GCUUUCACGGCAUGUAGAUGAGACUCCGGCAGACAA (((.......)))((((((((((((((((.....).))..((((((.(((((((...........)))))(..(((.......-)))..).))))))))))))))))..)))))...... ( -37.40) >consensus GUAUAAAUCUUGCGCCGGUUUUAUUUGGCUUAAUGACCAGACGUGCACGGCUCCAUAAUUUACAGGGGGUGGGUGGUUCAGUUCGCUUUC_____AUGUAGAUGAGCCACCGGCAGACAA ...(((((..((.((((((....((((((.....).)))))...)).))))..))..)))))..(...((.(((((((((....((...........))...))))))))).))...).. (-33.33 = -32.67 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:31 2006