Locus 1719

Sequence ID 3L_DroMel_CAF1
Location 4,995,709 – 4,995,816
Length 107
Max. P 0.599623
window2650

overview

Window 0

Location 4,995,709 – 4,995,816
Length 107
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 87.56
Mean single sequence MFE -30.08
Consensus MFE -24.50
Energy contribution -25.26
Covariance contribution 0.76
Combinations/Pair 1.17
Mean z-score -1.48
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.599623
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4995709 107 + 23771897
GGCUUACAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCGGAUAUUUAUUCAUUAGCCAUUUG
((((.((.((((((((......-.......(.((((((....))))))).(((.((((.....))))))))))))))).))...((((....))))...))))..... ( -32.40)
>DroSec_CAF1 216371 107 + 1
AGUUUUAAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG
........((((((((......-.......(.((((((....))))))).(((.((((.....)))))))))))))))(((((..((.......))..)))))..... ( -29.90)
>DroSim_CAF1 236112 107 + 1
UGUUUUAAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGUGGACGGGAGUAGGGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG
........((((((((......-.......(.((((((....))))))).(((.((((.....)))))))))))))))(((((..((.......))..)))))..... ( -29.00)
>DroEre_CAF1 219583 103 + 1
AUUUCCAAGACACUAUUCCAUUUUUCUCUAGUGCAUCCGAGAGGAUGCAGACAAUCAGGCGGACGGGU-----GUGCUGGCUGCAGAUAUUUAUUCAUUAGCCAUUUG
.......(((((((..(((............(((((((....)))))))(.....)....)))..)))-----)).))(((((..((.......))..)))))..... ( -29.20)
>DroYak_CAF1 224399 108 + 1
AGUUUAAAAACACUCUUCCAUUUUUCUUGAGUGCAUCUCAAAGGAUGCCAACUAUCAAGCGGACGGGAGUAGAGUGCUGGCUGCAGAUAUUUAUUCAUUAGCCAUUUG
..........(((((((((..((..(((((..((((((....))))))......)))))..))..)))..)))))).((((((..((.......))..)))))).... ( -29.90)
>consensus
AGUUUAAAGGCACUCUUCCAUU_UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG
........(((((((((((......((.((((((((((....))))))..))))...))......)))..))))))))(((((..((.......))..)))))..... (-24.50 = -25.26 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:26 2006