Locus 1712

Sequence ID 3L_DroMel_CAF1
Location 4,984,751 – 4,984,848
Length 97
Max. P 0.907316
window2641

overview

Window 1

Location 4,984,751 – 4,984,848
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 94.63
Mean single sequence MFE -27.10
Consensus MFE -25.00
Energy contribution -25.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.92
SVM decision value 1.05
SVM RNA-class probability 0.907316
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4984751 97 - 23771897
CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC
........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90)
>DroSec_CAF1 205363 97 - 1
CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC
........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90)
>DroSim_CAF1 224779 97 - 1
CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC
........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90)
>DroEre_CAF1 208694 97 - 1
CACAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAGCAGUGCCAAAAACGCAGACAAUGGCA-GCGUUGACUGCGGUUCGCGAUAAAUCAGC
........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -24.40)
>DroYak_CAF1 213020 97 - 1
CACAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAGCAGUGCCAAAAACGCAGACAAUGGCA-GCGUUGACUGCGGUUCGCGAUAAAUCAGC
........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -24.40)
>DroAna_CAF1 215129 100 - 1
UGUGUGUGUCGCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAUCGCAGACAAUGGCAAACGUUGACUGCGGUUCGCGAUAAAUCAGC
..((..((((((((((.(((.((..((.(.(.....).).))..))))).)))((((((((.(((((.....))))).)))))))))))))))...)).. ( -30.10)
>consensus
CGCAUACA__UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA_ACGUUGACUGCGGUUCGCGAUAAAUCAGC
.............(((((((..................(((.......))).....(((((.(((((.....))))).)))))....)))))))...... (-25.00 = -25.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:17 2006