Locus 170

Sequence ID 3L_DroMel_CAF1
Location 521,684 – 521,775
Length 91
Max. P 0.942238
window239

overview

Window 9

Location 521,684 – 521,775
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 94.40
Mean single sequence MFE -18.60
Consensus MFE -16.08
Energy contribution -16.08
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.86
SVM decision value 1.32
SVM RNA-class probability 0.942238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 521684 91 + 23771897
AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUUUUCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU
.(((....)))......((((((....((((((...((((.....((((.(((....))).))))...))))..))))))))))))..... ( -15.80)
>DroSec_CAF1 101374 91 + 1
AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUCCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU
.(((....)))......((((((((((.((.((((((((.((.....)).)))))))).)).)).....((....)).))))))))..... ( -19.80)
>DroSim_CAF1 105316 91 + 1
AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUCGGAUUGAUUGUCCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU
.(((....)))......((((((((((.((.((((((((.((.....)).)))))))).)).)).....((....)).))))))))..... ( -19.80)
>DroEre_CAF1 105388 91 + 1
AUCGAAAUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUGGUUUCCUUGAUGAAUUCCAUAAUUUUCAACUU
.(((....))).(((((((.((......((..(((((((.((.....)).)))))))..)).))))))))).................... ( -21.40)
>DroYak_CAF1 107645 91 + 1
AGCGAAAUCGAGCAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUCGCUUCCUUCACGAAUUCAAUAAUUUUCAACUU
...(((.(((.(....((((....((.....((((((((.((.....)).))))))))..)))))).).))).)))............... ( -16.20)
>consensus
AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU
...(((.(((......(((((((........((((((((.((.....)).)))))))).)))))))...))).)))............... (-16.08 = -16.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:17 2006