| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,906,508 – 4,906,606 |
| Length | 98 |
| Max. P | 0.797437 |
| Location | 4,906,508 – 4,906,606 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 83.20 |
| Mean single sequence MFE | -30.21 |
| Consensus MFE | -20.03 |
| Energy contribution | -20.59 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4906508 98 + 23771897 AGGCUAAUGAAGUAGGAAUCAACAACGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGAGCAAGAGGAAAUAUUUCAUUAGU ..((((((((((((....((.(((((((.....))))))).((....)).(((((.(((.......)))))))).....)).....)))))))))))) ( -28.30) >DroSec_CAF1 127702 98 + 1 AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGGGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((((.......(((((((.....))))))).((((((...(((((.(((.......))))))))..)))).))...)))))))))))) ( -34.00) >DroSim_CAF1 137688 98 + 1 AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGGGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((((.......(((((((.....))))))).((((((...(((((.(((.......))))))))..)))).))...)))))))))))) ( -34.00) >DroEre_CAF1 129204 98 + 1 AGGCUAAUGAAGAAGGCAUCAGCAGCGGUAAUCUCGUUGCGCCCCAGGGACAUUAAUCCUCCGAAUGGAUAAUGAGCAGGAGGAAAUACUUCAUUAGU ..((((((((((..(((....(((((((.....)))))))))).............((((((................))))))....)))))))))) ( -32.89) >DroYak_CAF1 131812 98 + 1 AGGCUAAUGAAGAAGGUAUCAACAGCGGCAAGCUCGUUGUGCCCCAAGGACAUUAAUCCUCUGAAUGGUUGAUGAGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((..((((.(((((((.....))).)))))))).............((((((.....(((....))).))))))....)))))))))) ( -30.20) >DroAna_CAF1 136045 91 + 1 AGGCUAAUGAAAGAAAAAUCAACAGCCGUAAUCAUGCAUUACCCCAAGGAAAUGAGUGGUCUCUU-------UGGGGAGUAGGAAGCACUUCAUUAAU .((((..(((........)))..)))).......(((.((.(((((((((.((.....)).))))-------))))).....)).))).......... ( -21.90) >consensus AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCAGGGACAUUAAUCCUCUGAAUGGAUGAUGAGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((.........(((((((.....))))))).((....)).......((((((................))))))....)))))))))) (-20.03 = -20.59 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:28 2006