Locus 1675

Sequence ID 3L_DroMel_CAF1
Location 4,890,269 – 4,890,369
Length 100
Max. P 0.529617
window2586

overview

Window 6

Location 4,890,269 – 4,890,369
Length 100
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.75
Mean single sequence MFE -26.45
Consensus MFE -17.12
Energy contribution -18.29
Covariance contribution 1.17
Combinations/Pair 1.18
Mean z-score -1.41
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.529617
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4890269 100 - 23771897
UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACAAGUGCCAAAAGCAUAC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGUUGCU
...((((((.(((.(((.((........)).))).)))))))))......((((.((((((((-......))))))))....))))............... ( -32.30)
>DroGri_CAF1 144052 90 - 1
UUAGUGCGAAAUUAAUGGGCACAACAAGUAA---CGACUCUCACAUCUAUGCAAAAAGCCGACAAGCUCAUAUUGUUUGA----GCUUCAGUUUUGA----
...((((...........)))).........---....................(((((.((..((((((.......)))----))))).)))))..---- ( -15.50)
>DroSec_CAF1 111664 100 - 1
UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGAUGCU
...((((((.(((.(((.((........)).))).)))))))))............((((((.-.((((.(...(((......)))..)))))..)))))) ( -28.20)
>DroSim_CAF1 121114 100 - 1
UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGAUGCU
...((((((.(((.(((.((........)).))).)))))))))............((((((.-.((((.(...(((......)))..)))))..)))))) ( -28.20)
>DroEre_CAF1 112909 100 - 1
UUAGUGCGAACUUGAUGGGCAUAUAAAAGUACAUCAGGUCGCACACCAGUGCCAAAAGCUUCC-AGCUCCGUAUGUUUGAAGUGGCUUCAGAUCAGAUUCC
...((((((.(((((((..(........)..)))))))))))))......(((....(((((.-(((.......))).))))))))............... ( -30.80)
>DroYak_CAF1 114201 96 - 1
UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGUACCAGGUCGCACUCCAGUGCCAAAAGCUUCC-AGUUCAGUAUGUUUGAAAUGGCUUCAGAUCAGA----
...(((((...((((((....))))))..)))))..((((((((....))))...(((((...-..(((((.....)))))..)))))..))))...---- ( -23.70)
>consensus
UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC_AGUUCCGUAUGUUUGAAGUGGCUUCAAAUCAGAUGCU
...((((((.(((.(((.((........)).))).)))))))))......((((.((((...............))))....))))............... (-17.12 = -18.29 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006