Locus 1667

Sequence ID 3L_DroMel_CAF1
Location 4,846,347 – 4,846,437
Length 90
Max. P 0.500000
window2578

overview

Window 8

Location 4,846,347 – 4,846,437
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 85.03
Mean single sequence MFE -22.05
Consensus MFE -16.38
Energy contribution -17.27
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4846347 90 - 23771897
CUCCCAACUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUGUCGAAUU-
.............((..(((....)))((((((((...))))))))........))........((((((((........))))))))..- ( -21.30)
>DroSec_CAF1 74336 86 - 1
----CAUCUCGUACCAUCCGAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACAGUAAAACUUCAGUCGAAUU-
----.............(((.(..((.((((((((...)))))))).))..).)))........((((((............))))))..- ( -20.00)
>DroSim_CAF1 78486 90 - 1
CUCCCAUCUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCCAACUUUUUCGACGGUAAAACUUCUGUCGAAUU-
.............((..(((....)))((((((((...))))))))........))........((((((((........))))))))..- ( -22.30)
>DroEre_CAF1 74845 86 - 1
----AAUCUCGUCCCAUACAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCGAAACUUCUACCAAAUU-
----....................(((((((((((...))))))))....(((((..............))))).........)))....- ( -18.44)
>DroYak_CAF1 75599 86 - 1
----AAUCUCGUAGCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUACCGAAUU-
----....(((..((..(((....)))((((((((...))))))))))..(((((..............)))))..........)))...- ( -22.04)
>DroAna_CAF1 78938 81 - 1
CGCCCGCCUCGUCGC--------CUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGGCG--AAAACUUCCGCCGAAGUC
.(((.((...((.((--------....((((((((...)))))))))))).)).)))......((((((((--........)))))))).. ( -28.20)
>consensus
____CAUCUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUGCCGAAUU_
........................((.((((((((...)))))))).))...............((((((((........))))))))... (-16.38 = -17.27 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:17 2006