| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,835,036 – 4,835,135 |
| Length | 99 |
| Max. P | 0.916246 |
| Location | 4,835,036 – 4,835,135 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.78 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4835036 99 + 23771897 UGAAACACUCCCGAAUCCGGACAACGGCGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCCGACCACC-----GAGAUGCGGAUGCAAGUAC ......(((.(((....)))......((((((.((((........(((((........)))))..((((((....))).)-----)))))).)))))).))).. ( -26.80) >DroPse_CAF1 99678 99 + 1 AGAACCAUCCAAGAACCAGCA-----CCAUCUUUAUCGCAAUCAUUCACAUCGCCACUUGUGAAAUCAUGGCAGGCCACCGCCGAGAGAUGAGUAUGCGUAUAU ..............((((..(-----((((((((...((.....((((((........))))))......)).(((....))).))))))).)).)).)).... ( -21.30) >DroSim_CAF1 67095 99 + 1 UGAAACACUCCCGAACCCGGACAACGGCGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACC-----GAGAUGAGGAUGCAAGUAC ......(((.(((....)))......(((((((((((........(((((........)))))..((((((....))).)-----))))))))))))).))).. ( -31.30) >DroEre_CAF1 63367 89 + 1 UGAAACACUCCCGAUCCC----------GUCCUUAUCGUAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACC-----GAGAUGAGGAUGCAAGUAC .................(----------(((((((((........(((((........)))))..((((((....))).)-----))))))))))))....... ( -23.80) >DroYak_CAF1 63632 99 + 1 UGAAACACUCCCGAUCCCGGACAACUACGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACC-----GAGAUGAGGAUGCAAGUAC ..........(((....)))...(((.((((((((((........(((((........)))))..((((((....))).)-----))))))))))))..))).. ( -28.00) >DroAna_CAF1 66706 99 + 1 CCACAUCCACCCGAUAGCAAGCAGCGCCAUCUUUAUCGCAAUCAUUCACAUCGCCACUUGUGAAAACAUGCCAAACCAUA-----GAGUUAAGGAUGCUAAUAU ...(((((....(((.((.......)).)))......(((....((((((........))))))....))).........-----.......)))))....... ( -18.10) >consensus UGAAACACUCCCGAACCCGGACAACGCCGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACC_____GAGAUGAGGAUGCAAGUAC ...........................((((((((((........(((((........)))))....((((....))))........))))))))))....... (-18.59 = -18.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:16 2006