| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,829,601 – 4,829,697 |
| Length | 96 |
| Max. P | 0.888840 |
| Location | 4,829,601 – 4,829,697 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.24 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.33 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4829601 96 + 23771897 CAA---AGGAAGUUGUUAGAUCCCAGAAAG----GAGCGCUGACCGAAAUCCUUGGCUCGCUGCGGUUCAAAUGCCUUUUAACUUAACAACUUUUUUUCC-UGC .((---(((((((((((((..........(----.((((..(.((((.....))))).)))).)(((......))).......)))))))))))))))..-... ( -25.60) >DroVir_CAF1 75886 85 + 1 UGU---AGGAAGUUGUUAGAACC--GAAAG----GCACGCUGACCGAAAUCCUGG--CCGCUGUGGUUCAAAUGCCUUUUAACUUAACAACUUUUU-------- ...---(((((((((((((....--(((((----(((.((.(.(((......)))--).))((.....))..))))))))...)))))))))))))-------- ( -23.20) >DroGri_CAF1 83313 87 + 1 CAA---AGGAAGUUGUUAGACCCCCAAAAG----GCGAACUGACCGAAAUCCGAG--CCGCUGCGGUUCAAAUGCCUUUUAACUUAACAACUUUUU-------- ...---(((((((((((((......(((((----(((....((......)).(((--(((...))))))...))))))))...)))))))))))))-------- ( -24.40) >DroWil_CAF1 58256 94 + 1 CCGAGGAGGAAGUUGUUAGAUUCAACAAAAAAAAAAAAAAGGACCGAAAUCCUUGA--CGCUGAGGUUCAAAUGCCUUUUAACUUAACAACUUUUU-------- ......(((((((((((((...................(((((......)))))..--....(((((......))))).....)))))))))))))-------- ( -19.60) >DroMoj_CAF1 94574 73 + 1 CAA---AGGAAGUUGUUAGACCC--A----------------ACUGAAAUCCUAG--CCGCAGCGGUUCAAAUGCCUUUUAACUUAACAACUUUUU-------- ...---(((((((((((((....--.----------------............(--(....))(((......))).......)))))))))))))-------- ( -14.60) >DroAna_CAF1 61447 83 + 1 CAA---AGGAAGUUGUUAGAUCC-----------------UGGCCGAAAUCCUU-GCUCGCUGCGGUUCAAAUGCCUUUUAACUUAACAACUUUUUUUCCUUGC .((---(((((((((((((....-----------------.(((......((..-((.....)))).......))).......)))))))))))))))...... ( -18.02) >consensus CAA___AGGAAGUUGUUAGAUCC__AAAAG____G____CUGACCGAAAUCCUUG__CCGCUGCGGUUCAAAUGCCUUUUAACUUAACAACUUUUU________ ......(((((((((((((.........................((............))....(((......))).......)))))))))))))........ (-11.47 = -11.33 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:15 2006