Locus 1662

Sequence ID 3L_DroMel_CAF1
Location 4,817,517 – 4,817,619
Length 102
Max. P 0.826167
window2572

overview

Window 2

Location 4,817,517 – 4,817,619
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -24.22
Consensus MFE -19.41
Energy contribution -19.47
Covariance contribution 0.06
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.80
SVM decision value 0.70
SVM RNA-class probability 0.826167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4817517 102 - 23771897
CUCUGACCCACA------CCCUCCCCCACCACC-CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
((((((((.(((------............((.-.....))((((.....))))..)))))))))))..(((((((((.....)))))))))................. ( -23.90)
>DroSec_CAF1 45114 92 - 1
CGCUGACCCACA----------------CCACC-CCUUCGCCUGACCCGUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
.(((..(((..(----------------((((.-.....(((.((....)).)))..)))))..)))..(((((((((.....))))))))).......)))....... ( -25.30)
>DroSim_CAF1 47403 92 - 1
CGCUGACCCACA----------------CCACC-CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
.(((..(((..(----------------((((.-...(((..((...))..)))...)))))..)))..(((((((((.....))))))))).......)))....... ( -22.90)
>DroEre_CAF1 46281 88 - 1
--------------------CUCCCCCGCCACC-CCGUCGUCUGACCCAUUGGGCCUGUGGUCAGGGACAAUUGCUGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
--------------------.((((..((((((-(((((....))).....)))...)))))..)))).((((((.((.....)).))))))................. ( -22.60)
>DroYak_CAF1 45279 108 - 1
CCCUGUCCCCUUCCCCUUCCCUCCACCGACACC-CCUGCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
....(((((..................(((...-.....)))(((((((.......)).))))))))))(((((((((.....)))))))))................. ( -28.10)
>DroAna_CAF1 49841 91 - 1
------------------CGCUCCUCCAUCGCCUUCUCCGUCUGACCCAUUCAGCUUGUGGUCAGGGACAAUUGCAGUGGAGCUCUGUAAUUAUUAAAAAGUAAAUAAC
------------------.....((((((.((....(((..((((((((.......)).))))))))).....)).))))))........................... ( -22.50)
>consensus
C_CUGACCCACA________CUCC_CC_CCACC_CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC
........................................(((((((((.......)).)))))))...(((((((((.....)))))))))................. (-19.41 = -19.47 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006