Locus 165

Sequence ID 3L_DroMel_CAF1
Location 509,318 – 509,430
Length 112
Max. P 0.910884
window233

overview

Window 3

Location 509,318 – 509,430
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.52
Mean single sequence MFE -28.19
Consensus MFE -16.22
Energy contribution -16.69
Covariance contribution 0.47
Combinations/Pair 1.14
Mean z-score -2.71
Structure conservation index 0.58
SVM decision value 1.07
SVM RNA-class probability 0.910884
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 509318 112 - 23771897
CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGUAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GUUAUGGGAAAAAUCCCAGGA
....(((((.((((((((((........--......((((((.((..((.((((((.(((......))).)))))).))....))))))))..------))))))))))......))))) ( -27.59)
>DroPse_CAF1 171212 104 - 1
UUUUUCCUGCUUCCCAUGGCCGAAAAA----AAAACC--CCCAAC--------AUGUUUU--CUAUAAAUUAAUUUCCUUUUUGUGAAAAGCAUGAAAAAGCAUGGGAAAAGUCCAAGGA
....((((((((((((((...(.....----......--..)..(--------(((((((--.((((((...........)))))).))))))))......)))))))..)))...)))) ( -21.82)
>DroSec_CAF1 89494 112 - 1
CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGAAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GCUAUGGGAAAAAUGCCAGGA
....((((((((((((((((........--......((((((.((.((((((((((.(((......))).))))))..)))).))))))))..------))))))))))....).))))) ( -32.99)
>DroEre_CAF1 92710 112 - 1
CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGUAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCG------GCUAUGGGAAAAAUCCCAGGA
....(((((.(((((((((((.......--......((((((.((..((.((((((.(((......))).)))))).))....)))))))).)------))))))))))......))))) ( -33.54)
>DroYak_CAF1 94823 114 - 1
CUUUUCCUGCUUCCCAUGGCCCCAAAAACACAAAACUUGGCCAGCGCAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GCUAUGGGAAAAAUCCCAGGA
....(((((.((((((((((................((((((.((.((((((((((.(((......))).)))))...)))))))))))))..------))))))))))......))))) ( -31.27)
>DroPer_CAF1 166963 103 - 1
UUUUUCCUGCUUCCCAUGGCCGAAAA-----AAAACC--CCCAAC--------AUGUUUU--CUAUAAAUUAAUUUCCUUUUUGUGAAAAGCAUGAAAAAGCAUGGGAAAAGUCCAAGGA
....((((((((((((((...(....-----......--..)..(--------(((((((--.((((((...........)))))).))))))))......)))))))..)))...)))) ( -21.90)
>consensus
CUUUUCCUGCUUCCCAUGGCCCCAAAAA__CAAAACUUGGCCAGCG_AGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA______GCUAUGGGAAAAAUCCCAGGA
....(((((.((((((((((...........(((((...................))))).......................((.....)).......))))))))))......))))) (-16.22 = -16.69 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:12 2006