| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,730,756 – 4,730,847 |
| Length | 91 |
| Max. P | 0.997347 |
| Location | 4,730,756 – 4,730,847 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 80.21 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -19.31 |
| Energy contribution | -20.62 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.84 |
| SVM RNA-class probability | 0.997347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4730756 91 + 23771897 CGAAG-CCAAAAUUCGGAUUUACGCGAGUUUUGGGAACGUUUG---------UUGGGUAGCAAGAUACGUUUGCUGCCCUUAAAUAUGUUUCAAAAACCCA .....-((((((((((........))))))))))((((((...---------..((((((((((.....))))))))))......)))))).......... ( -30.90) >DroSec_CAF1 104549 91 + 1 CGAAG-CCAAAAUUCGGAUUCACGCGAGUUUUGGGAACGUUUG---------UUGGGUAGCAAGAUACGUUUGCUGCCCUUCAAUAUGUUUCAAAAACUAG .....-((((((((((........))))))))))(((((((((---------..((((((((((.....))))))))))..))).)))))).......... ( -32.80) >DroSim_CAF1 106467 91 + 1 CGAAG-CCAAAAUUCGGAUUCACGCGACUUUUGGGAACGUUUG---------UUGGGUAGCAAGAUACGUUUGCUGCCCUUCAAUAUGCUUCAAAAACUAU .((((-((((((.(((........))).))))))...((((((---------..((((((((((.....))))))))))..))).)))))))......... ( -29.00) >DroEre_CAF1 106848 95 + 1 CGAACCCAAAAGUUCAGAUUCACCCGAGUUUUGGGAACGUUUGUUACCGCUCUUGGGUUCAAAGAUACGUUUGCUGUCCGA-AAUAAUUAUUAAAC----- .((((((((.(((.(((((...(((((...)))))...))))).....))).))))))))...((((.(....)))))...-..............----- ( -22.50) >consensus CGAAG_CCAAAAUUCGGAUUCACGCGAGUUUUGGGAACGUUUG_________UUGGGUAGCAAGAUACGUUUGCUGCCCUUCAAUAUGUUUCAAAAACUA_ .((((.((((((((((........))))))))))....................((((((((((.....)))))))))).........))))......... (-19.31 = -20.62 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:47 2006