Locus 1599

Sequence ID 3L_DroMel_CAF1
Location 4,690,468 – 4,690,578
Length 110
Max. P 0.999422
window2477

overview

Window 7

Location 4,690,468 – 4,690,578
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 93.27
Mean single sequence MFE -45.63
Consensus MFE -42.80
Energy contribution -42.69
Covariance contribution -0.11
Combinations/Pair 1.17
Mean z-score -2.40
Structure conservation index 0.94
SVM decision value 3.59
SVM RNA-class probability 0.999422
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4690468 110 - 23771897
CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGUCGGCCUUUGAACUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((...(((....)))..))))))))..))))))))... ( -47.26)
>DroSec_CAF1 64449 110 - 1
CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((.(.(((....))).)))))))))..))))))))... ( -46.56)
>DroSim_CAF1 65514 110 - 1
CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((.(.(((....))).)))))))))..))))))))... ( -46.56)
>DroEre_CAF1 66457 110 - 1
CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUAGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.((..((((...((((((((((...............))))))))))...)).))...((((((..((((((((.....(....)....))))))))..))))))))... ( -44.36)
>DroYak_CAF1 69533 110 - 1
CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.((..((((...((((((((((...............))))))))))...)).))...((((((..((((((((.(.(((....))).)))))))))..))))))))... ( -48.36)
>DroAna_CAF1 64361 110 - 1
UGCCAGCACCAAGCUGCAGUUGACAAACGAGCUCAUCCAGCUGCAGCAGCGCCGGCAGUGGGAGUCGGCCUUUGACCCCAACUUUGAUGCCGAGGCGAGCAUCCAGCAGA
.(((.((.(...((((((((((...............)))))))))).).))(((((.((((.((((.....)))))))).......))))).)))..((.....))... ( -40.66)
>consensus
CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA
.....((.....((((((((((...............))))))))))...........((((((..((((((((...(((....)))..))))))))..))))))))... (-42.80 = -42.69 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006