Locus 1558

Sequence ID 3L_DroMel_CAF1
Location 4,550,517 – 4,550,610
Length 93
Max. P 0.787457
window2417

overview

Window 7

Location 4,550,517 – 4,550,610
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 63.99
Mean single sequence MFE -37.78
Consensus MFE -11.13
Energy contribution -14.26
Covariance contribution 3.13
Combinations/Pair 1.43
Mean z-score -2.38
Structure conservation index 0.29
SVM decision value 0.58
SVM RNA-class probability 0.787457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4550517 93 + 23771897
GGUGGGCGGAUGAGAGC-AGU--GUGUGGGCGUGGCACAUAUGCAGGCACAC----------ACACACUUCCGCUUCCCUGGAGCUCCACAUCCGGACGCCAUAAU
((((..((((((.((((-.((--(((((.((.((.((....)))).)).)))----------))))...((((......))))))))..))))))..))))..... ( -43.70)
>DroEre_CAF1 135466 103 + 1
GGUGGGCGGAUGAGUGC-AGU--GUGUGGGCGUGGCACAUAUACAGGCACAGGCACAGGCAUACACACUUCCGCUUCCAUGGAGCUCCACAUCCGGUCGCCAUAAU
(((((.((((((((((.-(((--(((((.((.((((................)).)).)).))))))))..))))....(((....))))))))).)))))..... ( -41.79)
>DroYak_CAF1 131477 101 + 1
GGUGGGCGGUUGAGCGC-AGUUUGUGUGGGCGUGGCACAUAUGCAGGCACACACA----CACACACACUUCCGCUUCCCUGGAGCUCCACAUCCGCUUGCCAUAAU
((..(((((.((((((.-(((.((((((.(.(((((.(.......))).))).).----)))))).)))..))))....(((....))))).)))))..))..... ( -41.00)
>DroMoj_CAF1 181392 74 + 1
--AUGGCGA---------------AGGGAGAGCGGCAUGUGUGCAA--------------ACACACAUUUCCGUUG-CAUGCAGCGCCACAUCCGACGCUGAUAAU
--..((((.---------------.(((...(.((((((((((...--------------.)))))))....((((-....))))))).).)))..))))...... ( -25.60)
>DroAna_CAF1 129042 93 + 1
GGUGUGGUGUUGAAAUCAAGU--GGGUGGGCGUGGCAUGUGCAUGGGCGCACUU-----------CCGUCCCACAUCCAUGGAUCCCCACAUCCGUCCGCCAUAAU
..((((((((((....)))((--(((.((.(((((.(((((...(((((.....-----------.)))))))))))))))..))))))).......))))))).. ( -36.80)
>consensus
GGUGGGCGGAUGAGAGC_AGU__GUGUGGGCGUGGCACAUAUGCAGGCACAC________A_ACACACUUCCGCUUCCAUGGAGCUCCACAUCCGGCCGCCAUAAU
(((((.(((.((...........(((((.((.((.........)).)).)))))..................((((.....))))....)).))).)))))..... (-11.13 = -14.26 +   3.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:36 2006