Locus 1557

Sequence ID 3L_DroMel_CAF1
Location 4,544,105 – 4,544,195
Length 90
Max. P 0.668195
window2416

overview

Window 6

Location 4,544,105 – 4,544,195
Length 90
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.82
Mean single sequence MFE -30.75
Consensus MFE -20.11
Energy contribution -21.00
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.668195
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4544105 90 - 23771897
AGCCGUGAUAUAUUCACCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGGUG-------GCAAAGGGGCACGGAUGUU
..((((.((((((((....))))))))....((((((...))))))...)))).(((((((((...(....-------.)...)))))))))..... ( -31.80)
>DroSec_CAF1 121195 88 - 1
AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG---------GGAAAGGGGAACGGAUGUU
..((((..(...((((((((((((....)))))...(((.(..(((((....)))))..)..))).)))---------))))...)..))))..... ( -33.30)
>DroSim_CAF1 120925 88 - 1
AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG---------GGAAAGGGGAACGGAUGUU
..((((..(...((((((((((((....)))))...(((.(..(((((....)))))..)..))).)))---------))))...)..))))..... ( -33.30)
>DroEre_CAF1 127211 87 - 1
AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGUCUGUGCCCCAAGGGGAGAG----------GGGGGACGGAUGUU
..((((.......((((((((((...((...((((((...)))))).))...))))...(((....)))...)----------)))))))))..... ( -29.71)
>DroYak_CAF1 124802 97 - 1
AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGGCCCCAGGGGUGGGGGUAGGGAAAGGGGGACGGAUGCU
..(((........((((((...........(((((((((....))))..)))))((.((.(((((....))))).)).))...)))))))))..... ( -33.00)
>DroAna_CAF1 121387 75 - 1
AGCCGUGAUAUAUUCCCCGGAAUAUAUGUAUCUGUAUUGUGUGCAGCCAACGGAGUGUAUCCCUUUGGGGAUG-----------GG-----------
..((((.((((((((....))))))))....((((((...))))))...))))....((((((....))))))-----------..----------- ( -23.40)
>consensus
AGCCGUGAUAUAUUCCCCCGGAUAUAUGUAUCUGUAUUGUGUGCAGUCAGCGGACUGUGCCCCAAGGGG_G_______GGAAAGGGGAACGGAUGUU
..((((.((((((((....))))))))....((((((...))))))...)))).((((.((((....................)))).))))..... (-20.11 = -21.00 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:35 2006