Locus 1544

Sequence ID 3L_DroMel_CAF1
Location 4,502,696 – 4,502,788
Length 92
Max. P 0.977991
window2401

overview

Window 1

Location 4,502,696 – 4,502,788
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -16.62
Consensus MFE -9.57
Energy contribution -11.05
Covariance contribution 1.48
Combinations/Pair 1.26
Mean z-score -2.56
Structure conservation index 0.58
SVM decision value 1.80
SVM RNA-class probability 0.977991
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4502696 92 - 23771897
AUGUAAGAUUCUCUGCGGGGCAAACGUUGAAUAAA-UAUCAACAAGGUAGAGAACUGAAAUAACUAACAUAA-GGAAUGUGGAGUGAGAAUUAA
.....((.((((((((.(......)(((((.....-..)))))...))))))))))......(((.((((..-...))))..)))......... ( -17.40)
>DroSec_CAF1 80686 93 - 1
AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-UAUCAACAAGGCAGAGAACUGAAAUAACAAAUAUUAUAAAAUGUGGAGUGAGAAUUAA
......((((((((((.(......)(((((.....-..)))))...)))))))))).......((.(((((....)))))....))........ ( -17.90)
>DroSim_CAF1 80203 93 - 1
AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-UAUCAACAAGGCAGAGAACUGAAAUAACAAAUAUUAUAAAAUGUGGAGUGAGAAUUAA
......((((((((((.(......)(((((.....-..)))))...)))))))))).......((.(((((....)))))....))........ ( -17.90)
>DroEre_CAF1 84564 91 - 1
AUGUAAGGUUUUCUGCGG-GAAAACGUUGAAUAAA-AGUCAACAAGGUAGAGAACUAACAUAAAAAAUAUUA-AAAACGUGGAGUGAGAAAUUA
((((..(((((((((((.-.....)(((((.....-..)))))...)))))))))).))))...........-..................... ( -16.90)
>DroYak_CAF1 81724 92 - 1
AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA-AAUCAACAAGGUAGAGAACUAAAAUAACAAACAUUG-AAAAUGUGAAGUGUGAGUUAA
......((((((((((.(......)(((((.....-..)))))...))))))))))....((((..(((((.-.........)))))..)))). ( -20.60)
>DroAna_CAF1 84516 78 - 1
AUGUAAAGUUUUCAACUGGGAA---GCUGACUGAAAUGGCAA------------CUAAGGCAACAAAUAAAC-AAUGGGUAAACGGAGAAUAAA
......(((((((.....))))---)))..(((....(....------------)...(....)........-..........)))........ (  -9.00)
>consensus
AUGUAAGGUUUUCUGCGGGGAAAACGUUGAAUAAA_UAUCAACAAGGUAGAGAACUAAAAUAACAAAUAUUA_AAAAUGUGGAGUGAGAAUUAA
.(((..(((((((((((.......)(((((........)))))...))))))))))...)))................................ ( -9.57 = -11.05 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:18 2006