| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,483,382 – 4,483,484 |
| Length | 102 |
| Max. P | 0.829624 |
| Location | 4,483,382 – 4,483,484 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -39.80 |
| Consensus MFE | -25.78 |
| Energy contribution | -26.82 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4483382 102 + 23771897 AAGAUGGUGGUGAGGCUGUUGGUGGUGCGCCUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGAGGAGGCGCUGGAGAGGCCAGCAC ..............(((.(((.(.((((((((..---.(((((...------.)))))((((.....)))).)))).)))).).)))....)))(((((.....))))).. ( -38.50) >DroSec_CAF1 61023 102 + 1 AAGAUGGUGGUGCUGCUGUUGGUGUUGCGACUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCGCUGGAGAGGCCGGAAC .....((((.((((.(((((.(((((((......---.(((((...------.)))))((((.....))))...))))))).))))).)))).))))((.....))..... ( -43.70) >DroSim_CAF1 58927 102 + 1 AAGAUGGUGGUGCUGCUGUUGGUGGUGCGACUGG---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCGCUGGAGAGGCCGGAAC ....(((((((((((((.(((.(.((((..((.(---((((((...------.))))).(((.....))))).))..)))).).))).)))))))))......)))).... ( -42.20) >DroEre_CAF1 64414 102 + 1 AAGAUGGUAGUGCGGCUGUUGGUGGUGCGACUGA---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCAGUGGAGAGGCCGGAAC ............(((((.(((.((.(((..(((.---(.((((...------.((.((((((.....)))).)))).)))).).)))..))).)).)))...))))).... ( -35.10) >DroYak_CAF1 63014 102 + 1 AUGAUGGUAGUGCGGCUGUUGGUGAUGCGACUGA---UGGUGCGAU------GGCACCUGCUUGAUGGGCAUGGGCGGUAUGGGCAGGGGCUGCACUGGAGAGGCCGGAAC ....(((((((((((((.(((.(.((((..((.(---((((((...------.))))).(((.....))))).))..)))).).))).)))))))))......)))).... ( -39.30) >DroPer_CAF1 73613 96 + 1 GCUGAGAUGUCGCAGCUGUUGAGGAUGCAGCAGGGAAUGCUGCGGCGGCUGCGGCGGCUGCUUGAUGGGCAUGGGUGGCAUGA---UGGG---CACUGGAGC--------- (((.(..((((((((((((......(((((((.....)))))))))))))))))))((..(((.........)))..))....---).))---)........--------- ( -40.00) >consensus AAGAUGGUGGUGCGGCUGUUGGUGGUGCGACUGG___UGGUGCGAU______GGCACCUGCUUGAUGGGCAUGGGCGGCAUGGGCAGGGGCAGCACUGGAGAGGCCGGAAC .....((((.(((..(((((.(((.(((..........(((((..........)))))((((.....))))...))).))).)))))..))).)))).............. (-25.78 = -26.82 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:17 2006