| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 486,667 – 486,757 |
| Length | 90 |
| Max. P | 0.934376 |
| Location | 486,667 – 486,757 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 89.67 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.52 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 486667 90 + 23771897 UAACUGAAUUUUAAGUGGUCUUGCACUUAAACUACUUGAACUACU---CUCCGACUGGGCUAAUUCGGUGGUAAAUGUUUUAUUGCCGCCCAG .........((((((((((...........)))))))))).....---......((((((......((..((((.....))))..)))))))) ( -23.30) >DroSec_CAF1 67133 82 + 1 UAACUGAAUUUUAAGUGGUCUUGCACU-----------AACUACUCUCCUCCGAGUGGGCUAAUUCGGUGGUAAAUGUUUUAUUGCCGCCCAG .....(((((...((((......))))-----------..((((((......))))))...)))))((((((((........))))))))... ( -23.40) >DroSim_CAF1 68344 82 + 1 UAACUGAAUUUUAAGUGCUCUUGCACU-----------AACUACUCUCCUCCGAGUGGGCUAAUUCGGUGGUAAAUGUUUUAUUGCCGCCCAG .....(((((...(((((....)))))-----------..((((((......))))))...)))))((((((((........))))))))... ( -27.20) >DroEre_CAF1 69672 79 + 1 UAACUGAAUUUUAAGUGGUCUUGCACU-----------AACUACUC---UCCGACUGGGCUAAUUCGGUGGUAAAUGUUUUAUUGCCGCCCAG .............((((((........-----------.)))))).---.....((((((......((..((((.....))))..)))))))) ( -19.10) >consensus UAACUGAAUUUUAAGUGGUCUUGCACU___________AACUACUC__CUCCGACUGGGCUAAUUCGGUGGUAAAUGUUUUAUUGCCGCCCAG .....(((((...((((......)))).............((((((......))))))...)))))((((((((........))))))))... (-18.77 = -19.52 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:59 2006