Locus 1534

Sequence ID 3L_DroMel_CAF1
Location 4,443,266 – 4,443,381
Length 115
Max. P 0.506839
window2386

overview

Window 6

Location 4,443,266 – 4,443,381
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 86.05
Mean single sequence MFE -28.90
Consensus MFE -18.15
Energy contribution -18.55
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.63
SVM decision value -0.05
SVM RNA-class probability 0.506839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4443266 115 + 23771897
UUAAAUAAUGUCUGGAUUAUUUAGAACUCUCUAUUGAUUGGAGACCAGCCGCCUUAAGUUGACUAAUUAGUUGGAUUAGCGUCUUCGGCUACGAUUGUAUAAACAAACAGACGAU
........((((((.............((((((.....))))))..(((((......(((((((((....)))).))))).....)))))....((((....)))).)))))).. ( -26.40)
>DroSec_CAF1 20463 109 + 1
UUAAAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGCCUUAAGUCGACUAAUUAGUUGGAUUAGCGUCUUC------GAUUGUAUAAACAAAAAGACGAU
.........(.(((((((......)))((((((.....)))))))))).)...((((..(((((....)))))..))))((((((.------..((((....)))).)))))).. ( -25.60)
>DroSim_CAF1 19838 109 + 1
UUAGAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGCAUUAAGUCGCCUAAUUAGUUGGAUUAGCGUCUUC------GAUUGUAUAAACAAACAGACGAU
.....(((((((((((((......)))((((((.....))))))))))..))))))((.(((.(((((.....)))))))).))((------(.((((........)))).))). ( -27.50)
>DroEre_CAF1 23678 111 + 1
UUAAAUAAUGUCUGGGCUAUUGGGAACCAUCCAUUGAUUGGAGACCAGC----UGAAAUCAACUAAUUAGUUGGAUUAGCGUCUGCGAUCACGAUUGUUUAAACAAACAGACGAU
........((((((.....(((.((((.(((...((((((.((((..((----(((..((((((....)))))).))))))))).)))))).))).))))...))).)))))).. ( -33.20)
>DroYak_CAF1 21614 111 + 1
UUAAAUAAUGUCUGGGCUACUGAGAACUCUCCACUGAUUGGAGACCAGC----UAAAAUCAACUAAUUAGUUGGAUUAGCGUCUUCAGCCGAGAUUGCAUAAACAAACAGACGAU
........((((((((((...((((..((((((.....))))))...((----(((..((((((....)))))).))))).)))).))))....(((......))).)))))).. ( -31.80)
>consensus
UUAAAUAAUGUCUGGGUUAUUGAGAACUCUCCAUUGAUUGGAGACCAGCCGC_UUAAGUCGACUAAUUAGUUGGAUUAGCGUCUUC______GAUUGUAUAAACAAACAGACGAU
........((((((.((((........((((((.....))))))(((((....................)))))..))))..............(((......))).)))))).. (-18.15 = -18.55 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:03 2006