Locus 1527

Sequence ID 3L_DroMel_CAF1
Location 4,415,903 – 4,416,023
Length 120
Max. P 0.813180
window2376

overview

Window 6

Location 4,415,903 – 4,416,023
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.96
Mean single sequence MFE -38.02
Consensus MFE -33.10
Energy contribution -32.02
Covariance contribution -1.08
Combinations/Pair 1.16
Mean z-score -1.72
Structure conservation index 0.87
SVM decision value 0.66
SVM RNA-class probability 0.813180
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4415903 120 + 23771897
AAUGAGAAAAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUACCAGCUGCAGUGGGAUGAGGCCGACUACGGCGGCAUCGGGGUGUUGCGUCUGCCCCCCGAC
..(((......))).......(((((((((((......)))))))))))((((....)))).((((((((.((......)).)))...))))).((((((.((.......)).)))))). ( -40.20)
>DroVir_CAF1 1 116 + 1
----AGAAAAAUCAAAUUAUGAAAUCAAACGUUUGGCUACGUUUGGUUUGGUACGACUAUCAGCUGCAAUGGGAUGAGGCUGACUACGGCGGCAUCGGGGUGCUCCGUCUGCCCCCGGAU
----.............(((.(((((((((((......))))))))))).)))......((((((.((......)).))))))...(((.((((.((((....))))..)))).)))... ( -38.40)
>DroGri_CAF1 1 114 + 1
------AAAAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUAUCAGCUGCAAUGGGAUGAGGCUGACUACGGCGGCAUUGGGGUGCUACGUCUGCCCCCGGAU
------...........(((.(((((((((((......))))))))))).))).........(((((..(((...........)))..))))).((((((.((.......)))))))).. ( -35.80)
>DroWil_CAF1 1 114 + 1
------AAAAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUAUCAGCUACAAUGGGAUGAGGCUGAUUACGGCGGCAUUGGUGUACUACGACUGCCGCCCGAU
------...........(((.(((((((((((......))))))))))).)))((...(((((((.((......)).)))))))...((((((((((........))).))))))))).. ( -39.60)
>DroYak_CAF1 1 112 + 1
--------AAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUACCAGCUGCAGUGGGAUGAGGCCGACUACGGCGGCAUCGGGGUGUUGCGUCUGCCCCCCGAC
--------.............(((((((((((......)))))))))))((((....)))).((((((((.((......)).)))...))))).((((((.((.......)).)))))). ( -39.40)
>DroMoj_CAF1 1 114 + 1
------AAAAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUAUCAGCUGCAAUGGGAUGAGGCUGACUACGGCGGAAUCGGGGUGUUGCGACUGCCCCCGGAU
------.....((....(((.(((((((((((......))))))))))).)))((.((.((((((.((......)).))))))....)))))).((((((.((.......)))))))).. ( -34.70)
>consensus
______AAAAAUCAAAUUAUGAAAUCAAACGUUUGGUUACGUUUGGUUUGGUACGACUAUCAGCUGCAAUGGGAUGAGGCUGACUACGGCGGCAUCGGGGUGCUGCGUCUGCCCCCCGAU
.................(((.(((((((((((......))))))))))).)))...((((........))))((((..((((....))))..))))((((.((.......)))))).... (-33.10 = -32.02 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:54 2006