| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,364,622 – 4,364,718 |
| Length | 96 |
| Max. P | 0.767470 |
| Location | 4,364,622 – 4,364,718 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.97 |
| Mean single sequence MFE | -14.57 |
| Consensus MFE | -8.70 |
| Energy contribution | -8.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4364622 96 - 23771897 AUAAAUCCGAAGCGAAUGUGUCAAGCGGCAGGCAAAUUU-UCCA-ACACAAAAAAAA-----AAAAUAAUAGAAAAAAAUGCCUGAAAUGUUCUUUUGACACU .................((((((((((.((((((..(((-((..-............-----.........)))))...))))))...)))....))))))). ( -19.20) >DroPse_CAF1 16480 74 - 1 AUAAAUCCGAAGCGAAUGUGUCAAGCGCCAGGCAAAUUU-UCCCAACA----------------------------AAUUUGUGGAAAUGUUCUUUUGACACU .................(((((((((.....))....((-((((((..----------------------------...))).))))).......))))))). ( -15.20) >DroSim_CAF1 15474 100 - 1 AUAAAUCCGAAGCGAAUGUGUCAAGCGACAAGCAAAUUU-UCCA-ACACAAAA-AAAAUAAAACAAAAAUAGACAAAAAUGCCUGAAAUGUUCUUUUGACACU .................(((((((((.....))......-....-........-.......((((....(((.((....)).)))...))))...))))))). ( -11.40) >DroEre_CAF1 15723 94 - 1 AUAAAUCCGAAGCAAAUGUGUCAAGCGCCAGGCAAAUUU-UUCA-ACAAUACAAAA-------AAAAAAAAGACAAAAAUGCUUGAAAUGUUCUUUUGACACU .................((((((((((.((((((..(((-.((.-...........-------........)).)))..))))))...)))....))))))). ( -13.25) >DroYak_CAF1 16284 101 - 1 AUAAAUCCGAAGCGAAUGUGUCAAGCGCCAGGCAAAUUU-UCCA-ACAAAACAAAAUAGAAACAAAAAAAAGACAAAUAUGCCUGAAAUGUUCUUUUGACACU .................((((((((((.((((((.((((-((..-..........................)).)))).))))))...)))....))))))). ( -16.09) >DroAna_CAF1 18647 74 - 1 AUAAAUUCAAUGCGAAUGUGUCAAGCGUUUGGCAAAUUUUUCCA-ACA----------------------------AAUUCACUGAAAUGUUCUUUUGACACU ....((((.....))))(((((((((((((((..(((((.....-..)----------------------------))))..)).))))))....))))))). ( -12.30) >consensus AUAAAUCCGAAGCGAAUGUGUCAAGCGCCAGGCAAAUUU_UCCA_ACA_AA_A_AA_______AAAAAA_AGACAAAAAUGCCUGAAAUGUUCUUUUGACACU .................(((((((((.....))...................................................((.....))..))))))). ( -8.70 = -8.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:39 2006