Locus 1511

Sequence ID 3L_DroMel_CAF1
Location 4,343,630 – 4,343,729
Length 99
Max. P 0.614272
window2352

overview

Window 2

Location 4,343,630 – 4,343,729
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 92.57
Mean single sequence MFE -27.07
Consensus MFE -26.14
Energy contribution -26.03
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 0.16
SVM RNA-class probability 0.614272
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4343630 99 + 23771897
UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAGAGCGUCAGAAAAAAAACAGCUGUGAGCCGGAGAAUGCCCAUAGACAG
...(((((....((((((....))))))(((.......))).........)))))...............((((((.((........)).))))).).. ( -24.90)
>DroSim_CAF1 29824 96 + 1
UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCUAAACGAAACAUGAAAAGAGCGUCAGAA---AAACAGCUGUGAGGCGUAGAAUGCCCAUAGACAG
...(((((....((((((....))))))(((.......))).........))))).......---.....((((((.(((((...)))))))))).).. ( -29.40)
>DroYak_CAF1 29549 98 + 1
UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAAAGCGUCGGUAA-AAAACAGCUGUGUGGCGGAGAAUGCUCAUAGACAG
...(((((....((((((....))))))(((.......))).........)))))((((((..-......))).(((((((.....))).))))))).. ( -26.90)
>consensus
UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAGAGCGUCAGAAA_AAAACAGCUGUGAGGCGGAGAAUGCCCAUAGACAG
...(((((....((((((....))))))(((.......))).........)))))...............((((((.((((.....))))))))).).. (-26.14 = -26.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:31 2006