| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,334,173 – 4,334,276 |
| Length | 103 |
| Max. P | 0.939250 |
| Location | 4,334,173 – 4,334,276 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 95.25 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -16.47 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4334173 103 + 23771897 CCAAAAGCGAAAUGCGGAAAUAUAAAU--AUAUACGAGUCUAUAAACAAAUUAUGAACGCACUGCGUUUCAAAUAC-AAAUUGAUUCGUUUUCGAUUUCAAUCCAA ........(((((.(((((((((....--))))(((((((..............((((((...)))))).......-.....)))))))))))))))))....... ( -17.97) >DroSec_CAF1 20710 105 + 1 CCAAAAGCGAAAUGCGGAAAUAUAAAUAUAUAUACGAAUCUAUAAAAAAAUUAUGAACGCACUGCGUUUCAAAUAC-AAAUCGAUUCGUUUUCGAUUUCAAUCCAA ........(((((.((((((((((....)))))(((((((.((((.....))))((((((...)))))).......-.....)))))))))))))))))....... ( -18.70) >DroSim_CAF1 20498 105 + 1 CCAAAAGCGAAAUGCGGAAAUAUAAAUUUAUAUACGAAUCUAUAAACAAAUUAUGAACGCACUGCGUUUCAAAUAC-AAAUUGAUUCGUUUUCGAUUUCAAUCCAA ........(((((.((((((((((....)))))(((((((..............((((((...)))))).......-.....)))))))))))))))))....... ( -19.07) >DroYak_CAF1 19829 102 + 1 CCAAAAGCGAAAUGCGGAAAUAUAAAU----AUACGAAUCUAUAAACAAAUUAUGAACGCACUGCGUUUCAAAUACCAAAUUGAUUCGUUUUCGUUUUCAAUCCAA ........((((.((((((........----..(((((((..............((((((...)))))).............)))))))))))))))))....... ( -17.53) >consensus CCAAAAGCGAAAUGCGGAAAUAUAAAU__AUAUACGAAUCUAUAAACAAAUUAUGAACGCACUGCGUUUCAAAUAC_AAAUUGAUUCGUUUUCGAUUUCAAUCCAA ........(((((.((((((((((......))))((((((..............((((((...)))))).............)))))))))))))))))....... (-16.47 = -16.78 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:15 2006