Locus 1499

Sequence ID 3L_DroMel_CAF1
Location 4,334,041 – 4,334,133
Length 92
Max. P 0.850866
window2334

overview

Window 4

Location 4,334,041 – 4,334,133
Length 92
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 88.73
Mean single sequence MFE -25.77
Consensus MFE -20.59
Energy contribution -20.90
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.80
SVM decision value 0.79
SVM RNA-class probability 0.850866
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4334041 92 + 23771897
AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACCGAGGGUAGUAGUUUCCAUUAUUAGUCAGC----------------
(((((((((((......((((((((.(((.(((((.....))))).)))))))))))...(((...))).))).))))))))..........---------------- ( -21.30)
>DroSec_CAF1 20561 105 + 1
AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACAGAGGGUAGCAAUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG
.........((...((((((((((...(((((((..((((..(((((.(((.....))).)))))..))))..))))))).---..))))))........)))).)). ( -28.00)
>DroSim_CAF1 20349 105 + 1
AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGCCGGAGGGUAGUAGUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG
.........((...((((((((((...(((((((..((((..((((..(((.....)))..))))..))))..))))))).---..))))))........)))).)). ( -26.90)
>DroYak_CAF1 19680 105 + 1
AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGCCGGAGGGUAGUAGUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG
.........((...((((((((((...(((((((..((((..((((..(((.....)))..))))..))))..))))))).---..))))))........)))).)). ( -26.90)
>consensus
AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACGGAGGGUAGUAGUUUCCAU___UAGUCAGCAAAUCAAAUCGAGGCG
.((((((((((......((((((((.(((.(((((.....))))).))))))))))).((((....))))))).)))))))........................... (-20.59 = -20.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:14 2006