Locus 1491

Sequence ID 3L_DroMel_CAF1
Location 4,329,462 – 4,329,558
Length 96
Max. P 0.559578
window2322

overview

Window 2

Location 4,329,462 – 4,329,558
Length 96
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.61
Mean single sequence MFE -29.33
Consensus MFE -18.57
Energy contribution -19.45
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -2.19
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.559578
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4329462 96 + 23771897
ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAUUGCGGCUUAUAUACCAAGCGU---UAUAUAUAGAGUGGAUCUCUG-------GCUGAGAAGCGCC
....((((.((.....)).))))...(((((((((.((((...(.(((((((((........---..))))).)))).)...))))-------.))).)))))).. ( -30.10)
>DroSec_CAF1 16037 99 + 1
ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGACGGAAUCCGCCUUAUAUACCAAGCUUAUACAUAUACGGAGUGGAUCUCUG-------GCUGAGAAGCGCC
....((((.((.....)).))))...(((((((((.(((((((((((((((((.............))))).)).)))))).))))-------.))).)))))).. ( -31.22)
>DroSim_CAF1 14606 99 + 1
ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAAUCCGCCUUAUAUACUAAGCUUAUACAUAUAUGGAGUGGAUCUCUG-------GCUGAGAAGCGCC
....((((.((.....)).))))...(((((((((.((((((((((..((((((.............))))))..)))))).))))-------.))).)))))).. ( -35.62)
>DroEre_CAF1 15987 93 + 1
ACAAGUCAAACUAUAAGUACGACAAACACUUCCGGGCGAAUUCCGCCUUAUAUAG--AGC----ACAUAUAUGGAGUGGAUCUCUG-------GCUGGGAAGCGCC
....(((..((.....))..)))...(.(((((.(((((..(((((..((((((.--...----...))))))..)))))..))..-------))).))))).).. ( -27.10)
>DroYak_CAF1 15152 100 + 1
ACAAGUCAAACUAUAAGUACGACAAACACUUCCGGGCGUAUUCCGCCUUAUAUAG--AGC----ACAGAUAUGGAGUGGAUCUCUGAUGAGAAGCUGAGAAGCGCC
....(((..((.....))..)))...(.((((..(((....(((((..(((((..--...----....)))))..)))))((((....)))).)))..)))).).. ( -22.60)
>consensus
ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAUUCCGCCUUAUAUAC_AAGC_U__ACAUAUAUGGAGUGGAUCUCUG_______GCUGAGAAGCGCC
....((((.((.....)).))))...((((((((((((.....))))).........(((...........(((((.....))))).......)))).)))))).. (-18.57 = -19.45 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:03 2006