Locus 1487

Sequence ID 3L_DroMel_CAF1
Location 4,327,787 – 4,327,903
Length 116
Max. P 0.559788
window2316

overview

Window 6

Location 4,327,787 – 4,327,903
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.26
Mean single sequence MFE -23.75
Consensus MFE -15.20
Energy contribution -15.59
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.559788
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4327787 116 - 23771897
AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGCCAAUUUGUUAGCCACUUAUUCGGUUCUAAGCUCUUUUA
...(((((.(((((((....................(((((....)))))..(((----(....))))..))))))).))))).....(((((((........))))...)))....... ( -25.80)
>DroSec_CAF1 14393 116 - 1
AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGGCAAUUUAUUAGCCACUUAUUCGGUUCUAAGAUCUUUUA
(((((((((((.(((.....)))...........(((((.(((((((((.((...----.)).)))))))))))))).)))))........((((........))))....).))))).. ( -22.80)
>DroSim_CAF1 12988 107 - 1
AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCGGUUCUA---------A
...((((((((.(((.....)))...........(((((.(((((((((.((...----.)).)))))))))))))).)))))((....)).)))...............---------. ( -22.00)
>DroEre_CAF1 14288 115 - 1
AAAGGCGUUGCUUGAUUUAUUCAUUUAUGCAUUCGCUUGCAUGAUUGCAUAUUUA----CAUUUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCAGUUCUAAGUUUU-UUA
...(((((.(((((((.(((.((.(((((((......))))))).)).))).(((----(....))))..))))))).))(((.....))).)))(((((........)))))...-... ( -25.90)
>DroYak_CAF1 13446 119 - 1
AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAUAUUUAUUUGCAUGUGCAAUUAUCAAGUUGCGCCAAUUUGUUAGCCACUUAUUCGGUUCUAGGCUCU-UUA
...(((((.((((((...................(....).(((((((((((........))))))))))))))))).)))))........(((((((.....)))....))))..-... ( -30.00)
>DroAna_CAF1 13867 96 - 1
------UUGGCUUGAUUUAUUCAUUUAUUCAUUCUGUUGCACGAUUGCACAGUUA----CAGGUGUAAUUAUCGGGUUGUGGCACU------------CACAAGACUCAUAUAUCUUU--
------..((((((((.....(((((.......((((.(((....)))))))...----.))))).....))))))))(((.....------------))).................-- ( -16.00)
>consensus
AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA____CAUGUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCGGUUCUAAGAUCU_UUA
...(.(((.(((((((.....(((.............((((....)))).............))).....))))))).))).)..................................... (-15.20 = -15.59 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:57 2006