Locus 1481

Sequence ID 3L_DroMel_CAF1
Location 4,323,285 – 4,323,396
Length 111
Max. P 0.548475
window2304

overview

Window 4

Location 4,323,285 – 4,323,396
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -26.62
Consensus MFE -19.23
Energy contribution -20.29
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -2.13
Structure conservation index 0.72
SVM decision value 0.03
SVM RNA-class probability 0.548475
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4323285 111 - 23771897
UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUGUGUCGAGCGGAAUGGAAUGGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAACUAAUCACAG
..((((((..(((..((((((((.((((.(((((((.....))))))).)))).)))))))).....((.((((((......)))).)).))........)))..)))))) ( -33.20)
>DroSec_CAF1 9969 111 - 1
UAGUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAUGGAAUGGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAUGUAAACACAG
..((((.........((((((((.((((.((..((((.....)))))).)))).)))))))).....((.((((((......)))).)).)).............)))).. ( -25.60)
>DroEre_CAF1 9840 106 - 1
UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCCGUCGAGCGGAAU-----GGAACUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAUAGUAAUCACCG
((((((......((((((.....))))))..(((((((((..(.....-----.)...)))))))))((.((((((......)))).)).))......))))))....... ( -22.60)
>DroYak_CAF1 8850 106 - 1
UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAU-----GGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAUAGUUAUCACAG
..((((((.((.((.................((((((((((.......-----....))))))))))((.((((((......)))).)).)).......)).)).)))))) ( -25.10)
>consensus
UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAU_____GGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAAGUAAUCACAG
..((((((....((((((.....))))))..((((((((((................))))))))))((.((((((......)))).)).)).............)))))) (-19.23 = -20.29 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:45 2006