Locus 1474

Sequence ID 3L_DroMel_CAF1
Location 4,298,423 – 4,298,541
Length 118
Max. P 0.873256
window2295

overview

Window 5

Location 4,298,423 – 4,298,541
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.34
Mean single sequence MFE -32.31
Consensus MFE -26.78
Energy contribution -26.58
Covariance contribution -0.20
Combinations/Pair 1.21
Mean z-score -1.67
Structure conservation index 0.83
SVM decision value 0.88
SVM RNA-class probability 0.873256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4298423 118 - 23771897
CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUAACUUCCUCAGCAGUUUCUUCCGGUUCAGAUUCGGAGUCCACCAAUCCUUUCAGUUUGUUUUUGGGUGAACU
..(((((((((((.(((......(((((......))))).((((..((((........))))..)))))))...)))))))))))((((........(.....)......)))).... ( -30.84)
>DroSec_CAF1 22221 118 - 1
CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUUACUUCCGCAGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAACCCUUUCAGUUUAUUUUUGGGUGAACU
..(((((((((((.(((..(((((((((......))))).)))).........((....)).......)))...))))))))))).....((((...............))))..... ( -31.36)
>DroSim_CAF1 23378 118 - 1
CCGAUUCCGAGUCCACCAACCCUUUAAGUUUGUUCUUGACGGGACUUACUUCCGCGGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAACCCUUUCAGUUUGUUUUUGGGUGAACU
..(((((((((((.(((..(((.(((((......))))).)))..........((....)).......)))...))))))))))).....((((...............))))..... ( -34.26)
>DroEre_CAF1 22390 118 - 1
CCGAAUCCGAGUCUAUCAAUCCAUUGAGUUUGUUUUUGACGGGACUCACUUCUGCAGCAGUUUCUUCCGGCUCAGACUCGGAGUCCACCAAUCCCUUCAAUUUGUUUUUGGGUGAACU
..((.(((((((((.((((....))))............(((((...(((.(....).)))...)))))....))))))))).))((((.....(........)......)))).... ( -27.30)
>DroYak_CAF1 22776 118 - 1
CCGAUUCCGAGUCCACCAGUCCAUUGAGUUUGUUCUUGAUGGGACUCACUGCUGCAGCCGCCUCUUCCGGCUCAGAUUCGGAGUCCACCAAUCCCUUCAGCUUGUUUUUGGGUGAACU
..(((((((((((....(((((((..((......))..)).)))))......((.(((((.......))))))))))))))))))..........((((.((.......)).)))).. ( -37.80)
>consensus
CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUCACUUCCGCAGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAAUCCUUUCAGUUUGUUUUUGGGUGAACU
..(((((((((((.(((..(((.(((((......))))).)))..........((....)).......)))...)))))))))))((((.....................)))).... (-26.78 = -26.58 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006