Locus 1471

Sequence ID	3L_DroMel_CAF1
Location	4,277,321 – 4,277,412
Length	91
Max. P	0.547477

overview

Window 1

Location	4,277,321 – 4,277,412
Length	91
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	89.03
Mean single sequence MFE	-15.86
Consensus MFE	-11.42
Energy contribution	-12.06
Covariance contribution	0.64
Combinations/Pair	1.06
Mean z-score	-1.71
Structure conservation index	0.72
SVM decision value	0.03
SVM RNA-class probability	0.547477
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4277321 91 + 23771897
UCUUUAU--UCUAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAA-GGGCUGUUAUCAAAGCCCC
.......--...........(((..(((..(((.((((((.......))))))....)))...))).)))....-(((((........))))). ( -17.80)
>DroSec_CAF1 1074 93 + 1
UCUUUAUAGACUAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAAAAGGCUGUUAUCAAAGCC-C
.((((...((((........((((....))))..((((((.......))))))....))))((((((.........))))))....))))..-. ( -15.50)
>DroSim_CAF1 1120 93 + 1
UCUUUAUAGACAAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAAAAGGCUGUUAUCAGAGGC-C
....(((((((((..((...((((....)))).))..)))))))))......((((..((.((((((.........)))))).))..)))).-. ( -20.60)
>DroEre_CAF1 978 91 + 1
UCUUUUAAGACCAUUCAUUCGUUUUGCCAAAGUUGUUUUGUUUAUAACAAAACUUCCAGUCACGACCAAAACAA-AGGCUGUUAUCAAUGCC--
....................((((((........(((((((.....))))))).....((....))))))))..-.(((..........)))-- ( -11.40)
>DroYak_CAF1 995 87 + 1
----UUAAGACCAUUCAUUCGUUUUGCCAAACUUCUUUUGUUUAUAACAAAACUUCCAGUCACGGCCAACACAA-AGGCUGUUAUCAAAGCC--
----................((((((.........((((((.....)))))).........((((((.......-.))))))...)))))).-- ( -14.00)
>consensus
UCUUUAUAGACCAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAA_AGGCUGUUAUCAAAGCC_C
....................((((((........((((((.......))))))........((((((.........))))))...))))))... (-11.42 = -12.06 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:32 2006