Locus 1458

Sequence ID	3L_DroMel_CAF1
Location	4,220,995 – 4,221,104
Length	109
Max. P	0.829419

overview

Window 0

Location	4,220,995 – 4,221,104
Length	109
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	85.95
Mean single sequence MFE	-22.90
Consensus MFE	-16.56
Energy contribution	-16.38
Covariance contribution	-0.19
Combinations/Pair	1.15
Mean z-score	-2.00
Structure conservation index	0.72
SVM decision value	0.71
SVM RNA-class probability	0.829419
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4220995 109 + 23771897
AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACAUAUA----UAUUUAAAUCUAGAAAGGUCUCUUAUCUGCGACAGCAGAUGAC
........((((((...(((((......(((...-....((((((....))))))..)))......)----))))...)))))).........((((((((....)))))))). ( -21.20)
>DroSec_CAF1 70669 109 + 1
AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACACAUA----UAUUUAAAUAUAUAAUGGCCACUUAUCUGCGACAGCAGAUGAC
....((((((....))))))..............-....((((((....)))))).(((((...(((----(((....))))))..)))))..((((((((....)))))))). ( -27.20)
>DroSim_CAF1 68815 113 + 1
AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACACAUAUGUAUAUAUAAAUAUAUAAUGGUCUCUUAUCUGUGACAGCAGAUGAC
....((((((....))))))..............-....((((((....))))))((((((....(((((((......))))))).)))))).((((((((....)))))))). ( -23.00)
>DroEre_CAF1 68628 110 + 1
AUUCGACACCAUGUGGUGAUAUUUCCAAGAUAUUUUCAAUAUUUUAAUUAAAUUAACACCACACAUA----UAGUCAACUUUAUAAUGGUCCCUUAUCUGCGGCAGCAUUUGUC
....((((((((((((((..((((..(((((((.....)))))))....))))...))))))...((----(((......))))))))))........(((....)))...))) ( -20.20)
>consensus
AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU_CAAAUAAUUUAAUUAAAUUAAGGCCACACAUA____UAUUUAAAUAUAUAAUGGUCUCUUAUCUGCGACAGCAGAUGAC
....(((.....(((((((((((.....)))))).....((((((....))))))..))))).................................((((((....))))))))) (-16.56 = -16.38 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:12 2006