Locus 1457

Sequence ID 3L_DroMel_CAF1
Location 4,217,408 – 4,217,505
Length 97
Max. P 0.508966
window2269

overview

Window 9

Location 4,217,408 – 4,217,505
Length 97
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 89.15
Mean single sequence MFE -29.26
Consensus MFE -22.34
Energy contribution -22.78
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.508966
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4217408 97 - 23771897
UUUAUUCGCAAUAUUCCAAUUAGCAUGCGAUCGAUAAGAG--AGAGCGCAUACGGCUCUUUCUCUGCCAACGUCGCUGCUUCCCAUCUGUGUGAGUAUG
..((((((((...........((((.(((((.....((((--((((.((.....)).))))))))......))))))))).........)))))))).. ( -32.45)
>DroEre_CAF1 65138 97 - 1
UUCAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAG--AGAGCGCACUUGGCUCUUUUGCUGCCACCGCUGCUGCUCCCCAUCUGUGUGAGUAUC
...(((((((..........(((((.(((........(((--(((((.......))))))))........))))))))...........)))))))... ( -25.79)
>DroYak_CAF1 70309 99 - 1
UUUAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAGAGAGAGCGCAUUCGGCUCUUUUGCUGCCUCCGUUGCUGCUCCCCAUCCGUGUGAGUAUG
..((((((((...........((((.(((((.((..((..(((((((.......)))))))..))...)).))))))))).........)))))))).. ( -29.55)
>consensus
UUUAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAG__AGAGCGCAUUCGGCUCUUUUGCUGCCACCGUUGCUGCUCCCCAUCUGUGUGAGUAUG
..((((((((...........((((.(((((.....((....(((((.......)))))....))......))))))))).........)))))))).. (-22.34 = -22.78 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:11 2006