Locus 1446

Sequence ID 3L_DroMel_CAF1
Location 4,182,914 – 4,183,028
Length 114
Max. P 0.632692
window2253

overview

Window 3

Location 4,182,914 – 4,183,028
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.82
Mean single sequence MFE -36.55
Consensus MFE -22.35
Energy contribution -22.24
Covariance contribution -0.11
Combinations/Pair 1.50
Mean z-score -1.64
Structure conservation index 0.61
SVM decision value 0.20
SVM RNA-class probability 0.632692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4182914 114 + 23771897
CGUCGCAGUUUUGGUAUUAACCUCGACGUGCUGUUGGAAGAUAACUCAAACUUCCUAGCGCAGGCCGAUCUCAUUACGUUUUCGGAGCAGGAGAUAGGCCUCGCCCAAUUGCAG
....((((((..(((............((((((..(((((..........)))))))))))(((((.(((((....((....))......))))).))))).))).)))))).. ( -37.40)
>DroVir_CAF1 31890 114 + 1
CGUCGCAGCUUUGGCAUCAAUAUGGACGUGCUGCUGGAGGACAACACCAGUUUUCUGGCACAAGCCGAUCUUAUUACGUUCUCCGAUCAGGAAAUUAACCUUGCUCAGCUGCAG
....((((((..((((.......(((((((.(((..((((((.......))))))..))).(((.....)))..)))))))(((.....))).........)))).)))))).. ( -35.60)
>DroGri_CAF1 33600 114 + 1
AGGCGCAGCUUUGGUAUCAACAUGGAUGUGCUCCUGGAGGAUAAUUCCAGUUUUCUGGCUCAGGCCGAUCUAAUAACGUUCUCUGAGCAGGAAAUCGGACUCGCACAACUGCAA
....((((((.((.......)).)).((((((((....)))....(((.((((((((.((((((.((.........))...)))))))))))))).)))...))))).)))).. ( -34.00)
>DroWil_CAF1 44877 114 + 1
CGUCGCAGUUUUGGUAUUAAUAUGGAUGUUCUAUUGGAAGAUAAUUCCAAUUUUUUGGCACAAGCGGAUCUUAUUACGUUUUCGGAUCAAGAAAUUGGCCUUGCUCAGCUCCAG
.(..((..(((..(((..((((....)))).)))..)))(((((..(((((((((((((..(((((..........)))))...).))))))))))))..))).)).))..).. ( -22.00)
>DroMoj_CAF1 31940 114 + 1
CGUCGCAGCUUUGGCAUCAAUAUGGAUGUGUUGCUGGAAGACAAUUCCAGUUUCCUGGCGCAAGCUGAUCUGAUUACAUUCUCGGAUCAGGAGAUUGGACUGGCCCAACUGCAG
.(((.((((....(((((......)))))...))))...)))...((((((((((((((....)))(((((((........))))))))))))))))))...((......)).. ( -43.80)
>DroAna_CAF1 29715 114 + 1
CGACGCAGCUUUGGCAUCAAUAUGGAUGUCCUACUGGAGGAUAACUCCACCUUCCUGGCCCAAGCCGAUCUGAUUACAUUUUCGGAUCAGGAGAUCGGACUGGCCCAGCUGCAG
....((((((..((((((......)))((((...(((((.....)))))..((((((((....)))(((((((........))))))))))))...))))..))).)))))).. ( -46.50)
>consensus
CGUCGCAGCUUUGGCAUCAAUAUGGAUGUGCUGCUGGAAGAUAACUCCAGUUUCCUGGCACAAGCCGAUCUGAUUACGUUCUCGGAUCAGGAAAUUGGACUCGCCCAACUGCAG
....((((((..(((.................(((((((.....)))))))((((((((....)))((((..............))))))))).........))).)))))).. (-22.35 = -22.24 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:56 2006