| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,164,667 – 4,164,767 |
| Length | 100 |
| Max. P | 0.768285 |
| Location | 4,164,667 – 4,164,767 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.73 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -21.63 |
| Energy contribution | -22.88 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4164667 100 - 23771897 AUUAUAUCUAC----AUACUAAC-UCCUCUUAUGUCCAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUCCCGUUCAGCGAAUGGGAGCGCAAUCCUCGGGA ...........----........-..........((((((.......(((((.....)))))....((((.((((((((...))))))))))))...))).))). ( -27.70) >DroVir_CAF1 12662 102 - 1 AUUAAACUAGU-A--GUUUAUAUGGUUUCUCUCUGCCAGGUGCCAUCAGCUGUUUGUCAACUAUACGCGCAUACCCUACAGCGAAUGGGAGCGCAAUCCUCGAGA .........((-(--(((.(((((((........))))...((.....))....))).))))))..((((...(((..........))).))))........... ( -19.10) >DroGri_CAF1 11673 99 - 1 AUU--ACCAAU-A--AUCCCAAU-AAUUCUGACCAACAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUACCGUUUAGCGAAUGGGAGCGCAAUCCUCGAGA ...--......-.--........-..(((((((.(((((.((....)).))))).)))).......((((...((((((...))))))..)))).......))). ( -21.80) >DroSec_CAF1 10383 100 - 1 AUUAUAUAUAU----UAACUAAU-UCCUCUUAUGUCCAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUCCCGUUCAGCGAAUGGGAGCGCAAUCCUCGGGA ...........----........-..........((((((.......(((((.....)))))....((((.((((((((...))))))))))))...))).))). ( -27.70) >DroSim_CAF1 14762 99 - 1 AUUAUAUCUAC----AUACUAAC-UCCUCUUAU-CCCAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUCCCGUUCAGCGAAUGGGAGCGCAAUCCUCGGGA ...........----........-........(-((((((.......(((((.....)))))....((((.((((((((...))))))))))))...))).)))) ( -31.20) >DroEre_CAF1 10523 103 - 1 AUUAUAUACAUU-AUAUACAUAU-UCGCCUUACUCCCAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUCCCGUUCAGCGAAUGGGAGCGCAAUCCUCGGGA ..((((((...)-))))).....-.........(((((((.......(((((.....)))))....((((.((((((((...))))))))))))...))).)))) ( -31.10) >consensus AUUAUAUCUAU____AUACUAAU_UCCUCUUACGCCCAGGUGCCAUCAGUUGUUUGUCAACUAUACGCGCAUCCCGUUCAGCGAAUGGGAGCGCAAUCCUCGGGA ..................................((((((.......(((((.....)))))....((((.((((((((...))))))))))))...))).))). (-21.63 = -22.88 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:44 2006