Locus 1437

Sequence ID 3L_DroMel_CAF1
Location 4,155,542 – 4,155,656
Length 114
Max. P 0.834266
window2241

overview

Window 1

Location 4,155,542 – 4,155,656
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.36
Mean single sequence MFE -22.72
Consensus MFE -10.50
Energy contribution -13.00
Covariance contribution 2.50
Combinations/Pair 1.21
Mean z-score -2.39
Structure conservation index 0.46
SVM decision value 0.73
SVM RNA-class probability 0.834266
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4155542 114 + 23771897
UCUACCAGAUACUUUAUUAACGUAUA----GAUAAUUAUUUAUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUUGUGAAAAGCUUUAUCUGUUUCUUCAAAGAUUACUUAACC--
(((...(((.((.........(((((----(((....)))))))).(((((.((..((((.(((((((....))))))).))))..)).))))).)).)))....)))..........-- ( -21.40)
>DroSim_CAF1 5018 120 + 1
UCAACCAGAUACCUUAUUAACAUCUAUACGUAUAAUUAUUUCUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUCCUGAAAAGCGUUAUCAGUUUCUUUAAAGAUUACUUAACUUA
.............................(((...(((.....((.((((((((..((((.(((((((....))))))).))))..)))))))).)).....)))....)))........ ( -21.40)
>DroEre_CAF1 1308 94 + 1
UUAACCAGGUAUGAUAUAAGCGUAUA----GAUAAUUGUUUAUUCCGAUUAUGCC--------------------AUUCGUGAACAGCUUUAUCAGUUUGGUUAAAGAUUACUUAACG--
((((((((...(((((.((((.....----.(((((((.......)))))))...--------------------....(....).)))))))))..)))))))).............-- ( -19.30)
>DroYak_CAF1 5259 114 + 1
UUAGCCAGAUAUCGUAAGAACGUAUA----GAUAAUUAUUUAUACUGAUAAUGCCGUUUAAGAAUAUAUUUAUAUAUUCGUGAAAAGCAUUAUCAGUUUGCUUAAAGAUUACUUAACC--
((((.(((((.((....))..(((((----(((....))))))))(((((((((..((((.(((((((....))))))).))))..)))))))))))))).)))).............-- ( -28.80)
>consensus
UCAACCAGAUACCUUAUUAACGUAUA____GAUAAUUAUUUAUACCGAUAAUGCCGUUCAAGAAUGUAUUGAUAUAUUCGUGAAAAGCUUUAUCAGUUUCUUUAAAGAUUACUUAACC__
..............................................((((((((..((((.(((((((....))))))).))))..)))))))).......................... (-10.50 = -13.00 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:38 2006