| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,148,763 – 4,148,883 |
| Length | 120 |
| Max. P | 0.749617 |
| Location | 4,148,763 – 4,148,883 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.04 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -26.99 |
| Energy contribution | -27.22 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4148763 120 + 23771897 UUUAGCUUUACCUGGAGCAUUUUCUAUGCAGCAUUUCAUGCUGGGCGAAGGACAAGCCACAUCGUCUAGAACUUCGUAGCAAAUUAAAGUUGCCAAAGUGUGGACACAUACUCCAGGGCA ..........(((((((...........((((((...))))))(((.........))).....(((((..((((.(((((........)))))..)))).))))).....)))))))... ( -35.40) >DroGri_CAF1 39152 120 + 1 UCUCUGUUCACCUGGCGCAUUCUCAAUGCAGCAUUUCAUGCUGGGCGACGGGCAGGGCACAUCGUCCAGGACCUCGUAGCAGAUGAGCGUGGCCAGUGUGUGCACACAGACGCCCGGACA ..(((((.((((((((.(((.((((...((((((...)))))).((.((((((.((((.....))))..).)).))).))...)))).)))))))).))).....))))).......... ( -42.80) >DroWil_CAF1 35762 120 + 1 UGUAUAUUCACCUGGUGCAUUCUCUAUGCAACAUUUCAUACUGGGCGAUGGGCAGGGUACAUCGUCAAGCACUUCAUAGCAGAUCAGAGUGGCCAAGGUAUGAACACAAACGCCAGGACA ..........((((((((((.....)))).....((((((((.(((((((..(...)..)))))))...(((((............))))).....)))))))).......))))))... ( -35.10) >DroYak_CAF1 25725 119 + 1 C-CAAUAUUACCUGGAGCAUUCUCUAUGCAGCACUUCAUGCUGGGCGAAGGGCAUGCGACAUCGUCUAGAACUUCGUAGCAAAUCAAAGUGGCCAAAGUGUGGACACAUACUCCAGGACA .-........((((((((((.....))))..(((((..((((..((((((..(..(((....)))...)..)))))))))).....)))))......(((((....)))))))))))... ( -36.90) >DroMoj_CAF1 31070 115 + 1 -----UCUUACCAGGCGCAUUCUCUAUGCAGCACUUCAUGCUUGGCGAGGGACAGGGAACGUCGUCGAGCACCUCAUAGCAAAUGAGCGUGGCCAGUGUAUGGACGCAAACACCUGGGCA -----.....(((((.((((.....)))).((..((((((((((((((.((...(....).)).))...((((((((.....))))).)))))))).))))))).)).....)))))... ( -41.20) >DroAna_CAF1 27642 120 + 1 AUCAAAUUAACCUGGAGCAUUUUCAAUGCAGCACUUCAUGCUGGGCGAGGGACAGGGCACAUCGUCCAGGACUUCGUAACAGAUUAGGGUGGCCAGGGUGUGGACACAAACACCAGGACA ...........((((.((((.....))))..(((((....(((.((((((..(.((((.....)))).)..))))))..)))....))))).))))(((((........)))))...... ( -39.20) >consensus U_UAAAUUUACCUGGAGCAUUCUCUAUGCAGCACUUCAUGCUGGGCGAAGGACAGGGCACAUCGUCCAGAACUUCGUAGCAAAUCAGAGUGGCCAAAGUGUGGACACAAACACCAGGACA ..........((((((((((.....))))...........((((((((.(.........).))))))))...................(((.(((.....))).)))....))))))... (-26.99 = -27.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:18 2006