Locus 1408

Sequence ID 3L_DroMel_CAF1
Location 4,098,202 – 4,098,295
Length 93
Max. P 0.985632
window2188

overview

Window 8

Location 4,098,202 – 4,098,295
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 98.57
Mean single sequence MFE -17.00
Consensus MFE -16.50
Energy contribution -16.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.97
SVM decision value 2.01
SVM RNA-class probability 0.985632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4098202 93 + 23771897
CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00)
>DroSec_CAF1 4229 93 + 1
CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00)
>DroSim_CAF1 4203 93 + 1
CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUAAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
((.-..(((((((((((.....((..((((((((((((..........))))))))))))..))...)))))))...))))....))....... ( -17.50)
>DroEre_CAF1 4256 93 + 1
CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00)
>DroYak_CAF1 4246 93 + 1
CCU-AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
((.-..(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))....))....... ( -17.00)
>DroAna_CAF1 26733 94 + 1
CCUGAAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUCUGAAUACAA
......(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))............. ( -16.50)
>consensus
CCU_AAGAUCCGUAUGUACGAGUACUUAAUAAUAUUAAAUUAAAGUAGUUUAUGUUAUUACAUAACAGCAUACGCCUGGUCAAUUGGAAUACAA
......(((((((((((.....((..(((((((((.((((((...)))))))))))))))..))...)))))))...))))............. (-16.50 = -16.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:44 2006