Locus 1401

Sequence ID 3L_DroMel_CAF1
Location 4,074,138 – 4,074,242
Length 104
Max. P 0.880451
window2177

overview

Window 7

Location 4,074,138 – 4,074,242
Length 104
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 83.01
Mean single sequence MFE -40.45
Consensus MFE -32.96
Energy contribution -34.01
Covariance contribution 1.05
Combinations/Pair 1.21
Mean z-score -2.27
Structure conservation index 0.81
SVM decision value 0.91
SVM RNA-class probability 0.880451
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4074138 104 + 23771897
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC
((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70)
>DroVir_CAF1 21938 85 + 1
AACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUUUUCACCUGAGCCCA---CAGCU-----------------------UAGAUGAAGGUACAUAAAUC
....(((((((((((............))))....)))))))((((((((.((((((...---..)))-----------------------))).)))))).))....... ( -24.80)
>DroSim_CAF1 18469 104 + 1
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC
((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70)
>DroEre_CAF1 19227 104 + 1
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUCCCGAUGGAGGCGC-UAAAUC
((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((..........------)))))))))))....)))))))))-...... ( -44.70)
>DroYak_CAF1 19117 104 + 1
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA------GGGGAUCGCUACCGAUGGAGGCGC-UAAAUC
((((.((....)).))))...(((((((.((((....)))).)))(((((....((((((((((..........------)))))))))).....)))))))))-...... ( -42.50)
>DroAna_CAF1 17731 110 + 1
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGUUGAGGGGUUCCAGUCUCUUCAAACGGAUGAGGAUCCCUCGCGAUGGAGGUGC-UAGAUC
..(((((((((((((....(..(......)..)....))))))))(((((..((((((((((..((((........))))..))))))))))...)))))..))-)))... ( -41.30)
>consensus
GACUGGCGAUGGCGGGUCUUUGUGCAACUGUGAUUUAUCGCCGUUCUUCAGCUGAGCGAUCCCCACCUUCCUGA______GGGGAUCGCUCCCGAUGGAGGCGC_UAAAUC
((((.((....)).))))...(((((((.((((....)))).)))(((((...(((((((((((................)))))))))))....)))))))))....... (-32.96 = -34.01 +   1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:33 2006