Locus 14

Sequence ID 3L_DroMel_CAF1
Location 49,650 – 49,770
Length 120
Max. P 0.699315
window18

overview

Window 8

Location 49,650 – 49,770
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -36.03
Consensus MFE -33.57
Energy contribution -33.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.699315
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 49650 120 - 23771897
AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGGUUCUGUUGUAUAAUGGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC
.....(((.((((.(((.((......)).))).))))..(((((.((((.((((((....)))))).)))).((.(((((...((((.....))))..)))))))...))))).)))... ( -32.70)
>DroSec_CAF1 39831 120 - 1
AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUAUAGC
(((((...((((...))))...)))))...(((((..(((((((.(((((((((((....))))))))))))))))))..)).((((.....))))......)))............... ( -36.70)
>DroSim_CAF1 41182 120 - 1
AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUCUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC
(((((...((((...))))...)))))......(((((.(((((.((((((((((......)))))))))).((.(((((...((((.....))))..)))))))...)))))..))))) ( -38.70)
>consensus
AAGACCCACGACCUCGUCGAUCGUCUUCAACGCGUUCCUGUUGUAUAAUUGCCGAUCUUUAUUGGCAAUUGGCGACGGUGACUGUGAAUUUUUCACUGCACUGCGAUAAUAACUUGGAGC
(((((...((((...))))...)))))...(((......(((((.((((((((((......)))))))))))))))((((...((((.....))))..)))))))............... (-33.57 = -33.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:54 2006