Locus 1388

Sequence ID 3L_DroMel_CAF1
Location 4,040,557 – 4,040,653
Length 96
Max. P 0.914928
window2158

overview

Window 8

Location 4,040,557 – 4,040,653
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.19
Mean single sequence MFE -24.78
Consensus MFE -19.76
Energy contribution -19.56
Covariance contribution -0.20
Combinations/Pair 1.27
Mean z-score -1.96
Structure conservation index 0.80
SVM decision value 1.10
SVM RNA-class probability 0.914928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4040557 96 - 23771897
UUUCCGGUGGGGCAACUCAUGUCCAGUGUGGAAAAUAAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU
.....(((((((........((((((((((..(((((....-(((((........)))))....)))))..)).))-))).))).)))))))...... ( -23.30)
>DroSec_CAF1 19849 96 - 1
UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUAAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU
.....(((((((........(((((((((...(((((....-(((((........)))))....)))))....)))-))).))).)))))))...... ( -24.50)
>DroSim_CAF1 19922 96 - 1
UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUGAUAU-UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA-UUGUGAUUUCCCGCCAUUAAU
.....(((((((((.....))))).((((((((((((((((-(..((...(((......)))...))..)))))))-))....))))))))))))... ( -26.90)
>DroEre_CAF1 23238 97 - 1
UUUCCGGUGGGGCAACUUAUGUCCAGUGGGGAAAACAUUAUUUUGGUUUAUGUGUACUAACAUGUAUUUCGUAUCA-UUGUGAUUUCCCACCAUUCAU
.....(((((((((.....))))).((((((((.(((......(((..(((((((....)))))))..))).....-.)))..))))))))))))... ( -26.70)
>DroYak_CAF1 20977 97 - 1
UUUCCGGUGGGGCAACUCAUGUCCAGUGAGAAAUAUA-UAUUAUGGUUUAUGUGUAUCACAAAGUAUUUUAUAUCAACUGUUUUUUCCCACCAUUAAG
.....(((((((...(((((.....)))))....(((-((..(((.(((.((.....)).))).)))..)))))...........)))))))...... ( -22.50)
>consensus
UUUCCGGUGGGGCAACUCAUGUCCAGUGGGGAAAAUAAUAU_UUGGUUUAUGUGUACCAACAAGUAUUUAGUAUCA_UUGUGAUUUCCCGCCAUUAAU
.....(((((((...(((((.....)))))......(((((.(((((........)))))...))))).................)))))))...... (-19.76 = -19.56 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:15 2006