| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,030,116 – 4,030,213 |
| Length | 97 |
| Max. P | 0.551821 |
| Location | 4,030,116 – 4,030,213 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -18.72 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4030116 97 + 23771897 UCGCUGCGAAUUUAGUGGCAAACGAGCCAGCCAGUCGACCAGACA-----CACGAGCGCGAGUUUGAAAUCUAAACAAAAAAAAACCUGGCCCAAACUGAAA ..((..(.......)..))....(.(((((...(((.....))).-----..(((((....)))))....................))))).)......... ( -24.40) >DroSec_CAF1 9684 88 + 1 UCGCUGCGAAUUUAGUGGCGAACGAGCCAGCCAGUCGACCAGACA-----CACGAGCGCGAGUUUGAAAUCGA---------AAACCUGGCCCAAACUGAAA ((((..(.......)..))))..(.(((((...(((.....))).-----..(((((....))))).......---------....))))).)......... ( -27.50) >DroSim_CAF1 9732 88 + 1 UCGCUGCGAAUUUAGUGGCGAACGAGCCAGCCAGUCGACCAGACA-----CACGAGCGCGAGUUUGAAAUCGA---------AAACCUGGCCCAAACUGAAA ((((..(.......)..))))..(.(((((...(((.....))).-----..(((((....))))).......---------....))))).)......... ( -27.50) >DroEre_CAF1 9790 88 + 1 UCGCUGCGAAUUUAGUGGCGAACGAGCCAGCCAGUCGACCAGACA-----CACGAGCGCCAGUUUGAAAUCGA---------AAACCUGGCCCAAACCGUAA ((((..(.......)..))))..(.(((((...(((.....))).-----..(((((....))))).......---------....))))).)......... ( -25.00) >DroYak_CAF1 10386 88 + 1 UCGCUGCGAAUUUAGUGGCAAACGAGCCAGCCAGUCGACCAGACA-----CACGAGCGCGAGUUUGAAAUCGA---------AAACCUGGCCCAAACUGAAA ..((..(.......)..))....(.(((((...(((.....))).-----..(((((....))))).......---------....))))).)......... ( -24.40) >DroPer_CAF1 9669 84 + 1 ACGCUGCGAAUUUAGUGGCAAUCGAGCCAGAGAGCUGUACAGACGGACACCACGGACGCGACGC--GAAGCG----------AAGCUUGAACCA--CC---- ..((..(.......)..))..((((((......(((((....)))).)........(((.....--...)))----------..))))))....--..---- ( -19.90) >consensus UCGCUGCGAAUUUAGUGGCAAACGAGCCAGCCAGUCGACCAGACA_____CACGAGCGCGAGUUUGAAAUCGA_________AAACCUGGCCCAAACUGAAA ..((..(.......)..))....(.(((((...(((.....)))........(((((....)))))....................))))).)......... (-18.72 = -19.33 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:13 2006