| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,017,025 – 4,017,131 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 4,017,025 – 4,017,131 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 84.88 |
| Mean single sequence MFE | -35.28 |
| Consensus MFE | -25.47 |
| Energy contribution | -26.50 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4017025 106 + 23771897 GUGCUGUUCCGGCAAAUGCAAGGUGCCGUGGUGCAGAAAAGUAUUUGCAGCCGCGGACCCGGUUCCUCCAUGAGCAUUUUCUUCUCUUAGCCCCU-CUUAGC-ACUUC ((((((....(((((((((..((..((((((((((((......)))))).))))))..))((.....))....))))))..........)))...-..))))-))... ( -38.30) >DroSec_CAF1 6736 105 + 1 GUGCUGUUCCGGCAAAUGCAAGGUGCCGUGGUGCAGAAAAGUAUCUGCAGCCGCGGACCCGGUUCCUCCAUGAGCAUUUUUUUCUCUUAGCC-CU-CUUAGC-ACUUC ((((((....(((((((((..((..((((((((((((......)))))).))))))..))((.....))....))))))..........)))-..-..))))-))... ( -41.50) >DroSim_CAF1 7489 106 + 1 GUGCUGUUCCGGCAAAUGCAAGGUGCCGUGGUGCAGAAAAGUAUCUGCAGCCGCGGACCCGGUUCCUCCAUGAGCAUUUUUUUCUCUUAGCCCCU-CUUAGC-ACUUC ((((((....(((((((((..((..((((((((((((......)))))).))))))..))((.....))....))))))..........)))...-..))))-))... ( -40.90) >DroEre_CAF1 8515 106 + 1 GUGCUUUUCCGGCAAAUGCAAGGUGCCGUGGUGCAGAAAAGUAUUUGCAGCCGCGGACCCGGCUCCUCCAUGAGCAUAUUUUUCUCUUAACCCCU-CUUAGC-ACUUC (((((....((((....))..(((.((((((((((((......)))))).)))))))))))((((......))))....................-...)))-))... ( -34.30) >DroYak_CAF1 6778 105 + 1 GUGCUCUUCCGGCAAAUGGAAGGUGCCGUGGUGCAGAAAAGUAUNNNNN-NNNNNGAGCCGGCUCCUCCAUGAGCAUUUUUUUCUCUUAGCCCCU-CUUAGC-ACUUC (((((.....(((..(((((.((.((((..((((......)))).....-.........)))).)))))))(((.(.....).)))...)))...-...)))-))... ( -26.69) >DroAna_CAF1 6752 108 + 1 GUCCUGUUCCACGAAAUGAAGGGAGCUGUGACGCAGAAAAGCAUCUGCAGUGGCGGUGCCGGCUCCUCCAUGAGCAUAUUCUACUCCUAAGUACUCCUCAGUGGCUUU ........(((((((......((.(((((.(((((((......))))).)).))))).)).((((......))))...)))((((....)))).......)))).... ( -30.00) >consensus GUGCUGUUCCGGCAAAUGCAAGGUGCCGUGGUGCAGAAAAGUAUCUGCAGCCGCGGACCCGGCUCCUCCAUGAGCAUUUUUUUCUCUUAGCCCCU_CUUAGC_ACUUC ((((((....(((........((..((((((((((((......))))).)))))))..)).((((......))))..............)))......)))).))... (-25.47 = -26.50 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:04 2006