Locus 1380

Sequence ID 3L_DroMel_CAF1
Location 4,016,264 – 4,016,384
Length 120
Max. P 0.500000
window2146

overview

Window 6

Location 4,016,264 – 4,016,384
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.56
Mean single sequence MFE -41.18
Consensus MFE -22.77
Energy contribution -22.92
Covariance contribution 0.14
Combinations/Pair 1.31
Mean z-score -2.76
Structure conservation index 0.55
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4016264 120 + 23771897
GAUUCGUGGAGAACUACUUCCUUCGCGAGCGUCAGGAGUUAUUCUCGGUUUUUGAAUACCGCGCCUGGAUGGUGUUCUUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUGUGGAACU
...((((((((.........))))))))(((.((((((((((...((((........)))).(((...((((((((((.........))))))))))))).)))))))))))))...... ( -40.30)
>DroSec_CAF1 5978 120 + 1
GAUUUGUGGAGAACUACUUCCUCCGCGAGCGCCAAGAGUUAUUCUCAGUUUUUGAAUACCGCGCCUGGAUGGUGUUCCUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU
...((((((((.........))))))))((((...(((.....))).((........)).))))....((((((((((.........))))))))))..(((.(((....)))))).... ( -39.20)
>DroSim_CAF1 6731 120 + 1
GAUUUGUGGAGAACUACUUUCUCCGCGAGCGCCAGGAGUUAUUCUCGGUUUUUGAAUACCGCGUCUGGAUGGUGUUCCUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU
(.(((((((((((.....)))))))))))).(((((((.....)))(((........)))....))))((((((((((.........))))))))))..(((.(((....)))))).... ( -45.50)
>DroEre_CAF1 7754 120 + 1
GAUUCGUGGAGAACUAUUUCCUGCGGGAGCGCCAGGAGGUGUUCUCGGUUGUUGAUUACCAUGCAUGGAUGGUGUUCUUUAUUGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU
.(((((((((((((.((((((((((....)).))))))))))))))(((........)))...)))))))((((((((.........))))))))....(((.(((....)))))).... ( -48.00)
>DroYak_CAF1 6014 120 + 1
GUUUCGUGGAGAACUACUUUCUGCGGGAGCGACAGGAGGUAUUCUCGGUGGUUGAUUACCAUGCCUGGAUGGUGUUCUUCAUAGAAUGGAACACCAUGGCCAUGACUUUUGUGUGGAACU
(((((((((((((.(((((((((((....)).)))))))))))))).(((((.....)))))(((...((((((((((.........)))))))))))))))).((......))))))). ( -44.90)
>DroAna_CAF1 5998 120 + 1
GUUUUUUGCAGAACUAUUUUAUACGCGAACGUCAAGAGAUAUUUUCUGUAAUUCCCUACAACCCCUGGCUGCUACUCUUCAUCGAGUGGAGCACUCUAUCCAUGACCUUUGUGUGGAAUU
((((......)))).......((((((((.((((.(.((((.....((((......)))).......(((.((((((......)))))))))....))))).)))).))))))))..... ( -29.20)
>consensus
GAUUCGUGGAGAACUACUUCCUCCGCGAGCGCCAGGAGUUAUUCUCGGUUUUUGAAUACCACGCCUGGAUGGUGUUCUUUAUCGAAUGGAACACCAUGGCCAUGACUUUUGUCUGGAACU
...((((((((((...((((...((....))...))))...)))))(((........)))..(((...((((((((((.........))))))))))))))))))............... (-22.77 = -22.92 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:03 2006