| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,953,642 – 3,953,737 |
| Length | 95 |
| Max. P | 0.869979 |
| Location | 3,953,642 – 3,953,737 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.82 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -30.55 |
| Energy contribution | -31.47 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.869979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3953642 95 + 23771897 CCAAAGUGGCAGCGACAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAGCGCCGCGCGUGGUUUUGCCUACAGCCACACACACA------------- .....(((((.(((....((((....(((((((..((((......))))..)))))))...)))))))((((......)))).))))).......------------- ( -35.40) >DroPse_CAF1 26598 103 + 1 C---UGUGGCAGCGGCAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAACGCCGCGCGUGGUUUUGCCUACAGCCACAGUCA--CAGCCACACACGC .---((((((.(((((...(.....)(((((((..((((......))))..)))))))...)))))..((((((........)))))).....--..))))))..... ( -43.30) >DroSec_CAF1 26134 95 + 1 CCAAAGUGGCAGCGACAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAGCGCCGCGCGUGGUUUUGCCUACAGCCACACACAGA------------- .....(((((.(((....((((....(((((((..((((......))))..)))))))...)))))))((((......)))).))))).......------------- ( -35.40) >DroSim_CAF1 29424 93 + 1 CCAAAGUGGCAGCGACAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAGCGCCGCGCGUGGUUUUGCCUACAGCCACACACA--------------- .....(((((.(((....((((....(((((((..((((......))))..)))))))...)))))))((((......)))).))))).....--------------- ( -35.40) >DroEre_CAF1 26989 93 + 1 CCAAAGUGGCAGCGACAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAGCGCCGCGCGUGGUUUUGCCUACAGCCGCACACA--------------- .....(((((.(((....((((....(((((((..((((......))))..)))))))...)))))))((((......)))).))))).....--------------- ( -35.00) >DroWil_CAF1 34499 82 + 1 --UAACUGAGGACUACUACGGCGGACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAACGCCGCGCGUGGU-UUGCCUACAGC----------------------- --...((((((...((((((((((..(((((((..((((......))))..)))))))....)))).))))))-...))).))).----------------------- ( -38.10) >consensus CCAAAGUGGCAGCGACAUUGGCCAACGUGGCGUAUGAGUAAUUCGACUUUGACGCCGCAGCGCCGCGCGUGGUUUUGCCUACAGCCACACACA_______________ .....(((((.(((....((((....(((((((..((((......))))..)))))))...)))))))((((......)))).))))).................... (-30.55 = -31.47 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:27 2006