Locus 1325

Sequence ID 3L_DroMel_CAF1
Location 3,849,522 – 3,849,641
Length 119
Max. P 0.519497
window2068

overview

Window 8

Location 3,849,522 – 3,849,641
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -22.84
Consensus MFE -10.55
Energy contribution -11.71
Covariance contribution 1.16
Combinations/Pair 1.12
Mean z-score -2.13
Structure conservation index 0.46
SVM decision value -0.03
SVM RNA-class probability 0.519497
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3849522 119 + 23771897
AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU-ACUACUACUUAACAGUUUGCCAGCUAACUAAAAGUCGGCAGACAAUGUCGUAAACUAAAUGACU
..((((.(((.................((((((((...(((..........))).-.....)))))))).(((((((.(((.......))).)))))))..))).))))........... ( -24.40)
>DroSec_CAF1 49008 119 + 1
AAUUACAACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGAAAAUAUCCACCUU-ACUACUACUUAACAGUCAGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU
..((((...(....)...((((((((.((((((((...(((..........))).-.....)))))))).....(((.(((.......))).))).)))))))).))))........... ( -25.00)
>DroSim_CAF1 49473 119 + 1
AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU-ACUACUACUUAACAGUCAGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU
......((((........((((((((.((((((((...(((..........))).-.....)))))))).....(((.(((.......))).))).))))))))))))............ ( -25.50)
>DroEre_CAF1 49794 116 + 1
AAUUACUACGCCCGCGAAACAAUGUCCGUUAAA----UAGAAAAAUACCUCGCUUAGGUUCUACUUCAAAGUUUGUUAGCAAACUUAGGGUCGACAUAGAUUGUCGUAAACUAAAUUCGC
.............(((((......(((......----..(((....((((.....)))).....))).(((((((....))))))).))).(((((.....))))).........))))) ( -22.90)
>DroYak_CAF1 50821 112 + 1
AAUUACUACGCCCGCCAAACAAUAUCCGUUAAG----UAGGCACAUACCUAUCCUAACUACUACUUCAAAGUUUGUCAGCAAACUA----CCAGCAGCAAUUGUCGUAAACUAAAUUCGU
..((((.(((...((............((((.(----((((......)))))..))))...........((((((....)))))).----......))...))).))))........... ( -16.40)
>consensus
AAUUACUACGCCCGCUAAACAAUGUCCGUUAAGUAAAUAGGCAAAUAUCCACCUU_ACUACUACUUAACAGUUUGCCAGCUAACUAAAAGUCGGCAGACAUUGUCGUAAACUAAAUGACU
......((((........((((((((.(((.......(((....................)))......((((((....)))))).......))).))))))))))))............ (-10.55 = -11.71 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006