Locus 1305

Sequence ID 3L_DroMel_CAF1
Location 3,800,318 – 3,800,438
Length 120
Max. P 0.857322
window2042

overview

Window 2

Location 3,800,318 – 3,800,438
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.22
Mean single sequence MFE -52.20
Consensus MFE -43.49
Energy contribution -42.44
Covariance contribution -1.05
Combinations/Pair 1.44
Mean z-score -2.29
Structure conservation index 0.83
SVM decision value 0.81
SVM RNA-class probability 0.857322
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3800318 120 - 23771897
UGGUGGCACAUAGAUGACGGUGGCAUGUGGAUCGGUGGCCUUCUUGGCCUCCGCCACCGAAGCGAAGACGGGCAGUCCCAGAUGCUGGGUGCCUCCCUUCUUGGGGGAAAUGCCGCCGAC
.(((((((.........(((((((..(.....)((.((((.....)))).)))))))))...........((((..(((((...)))))))))(((((.....)))))..)))))))... ( -56.60)
>DroVir_CAF1 158 120 - 1
UGGCGGCACAUAGAUGACCGUGGCAUGUGGAUCCGUUGCCUUUUUCGCUUCCGCAACGGAGGCAAACACCGGCAGGCCCAAAUGCUGAGUGCCGCCCUUUUUGGGCGAAAUGCCGCCAAC
((((((((.............((((((((..((((((((.............))))))))......)))(((((........))))).)))))((((.....))))....)))))))).. ( -51.22)
>DroGri_CAF1 158 120 - 1
CGGUGGCACAUAGAUAACAGUGGCAUGCGGAUCCGUUGCCUUCUUCGCAUCGGCCACAGAGGCAAAAACGGGCAGACCCAAAUGCUGAGUGCCGCCCUUCUUGGGUGAAAUGCCGCCGAC
((((((((.............(((((.(((.....(((((((....((....))....)))))))....(((....))).....))).)))))((((.....))))....)))))))).. ( -46.10)
>DroWil_CAF1 1837 120 - 1
UGGUGGCACAUAGAUAACCGUGGCAUGGGGAUCGGUUGCCUUUUUGGCCUCGGCGACGGUGGCAAAAACGGGCAGACCCAAAUGUUGGGUGCCACCCUUUUUGGGUGAGAUGCCGCCAAC
(((((((((...(((..((((...))))..)))..((((((((((.((((((....))).))).)))).))))))(((((.....)))))..(((((.....))))).).)))))))).. ( -52.00)
>DroMoj_CAF1 158 120 - 1
UGGUGGCACAUAGAUGACCGUGGCAUGGGGAUCCGUUGCCUUUUUGGCUUCCGCAACGGAGGCAAAGACGGGCAGGCCCAAAUGCUGAGUGCCGCCCUUUUUGGGCGAAAUGCCACCAAC
((((((((.............(((((.(((..((..(((((((((.(((((((...))))))).)))).))))))))))..)))))......(((((.....)))))...)))))))).. ( -53.00)
>DroAna_CAF1 158 120 - 1
UGGCGGUACAUAGAUAACGGUGGCAUGUGGAUCGGUGGCCUUCUUGGCCUCGGCAACCGAGGCGAAGACGGGCAGUCCCAGGUGCUGGGUGCCGCCCUUUUUGGGUGAAAUGCCUCCAAC
(((.(((((((.((.((.((((((((.((((((((..((((((((.(((((((...))))))).)))).))))....)).))).))).)))))))).)).))..)))...)))).))).. ( -54.30)
>consensus
UGGUGGCACAUAGAUAACCGUGGCAUGUGGAUCCGUUGCCUUCUUGGCCUCCGCAACGGAGGCAAAGACGGGCAGACCCAAAUGCUGAGUGCCGCCCUUUUUGGGUGAAAUGCCGCCAAC
((((((((.............(((((.....((((((((.............))))))))((((.....(((....)))...))))..)))))((((.....))))....)))))))).. (-43.49 = -42.44 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:23 2006