Locus 1294

Sequence ID 3L_DroMel_CAF1
Location 3,750,657 – 3,750,753
Length 96
Max. P 0.671909
window2025

overview

Window 5

Location 3,750,657 – 3,750,753
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -39.75
Consensus MFE -31.44
Energy contribution -32.03
Covariance contribution 0.59
Combinations/Pair 1.28
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.671909
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3750657 96 + 23771897
---------UCGACACUCACCGUUAUUGUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGGUGGUGCUGGGCCAGUGGUGUUAGGGGUGGUGG
---------....(((.((((.(((....(((.(.(((((...)))))).)))((..(((..((((((((....))))))))..)))..))..))).))))))). ( -43.60)
>DroVir_CAF1 188355 96 + 1
---------CAGAGACUUACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCGCUGCCAGCGCCUGAUGAUGCUGGGCGAGCGGUGUCAGCGGUGGCGC
---------.((.((.(..((((((.......))))))..).)).))((..(.((((((((((...(((((.........))))).)))))).)))).)..)).. ( -38.10)
>DroPse_CAF1 192003 96 + 1
---------GGAUCACUCACCAUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGCGCCAGCGGUGUCAAUGGAGGCGG
---------.(((...((.((((((.......)))))).)))))((((..((((...))))..))))((((..(((((((((....)))))))))....)))).. ( -34.30)
>DroEre_CAF1 140707 96 + 1
---------GAGACACUCACCGUUAUUGUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGGUGGUGCUGGGCCAGUGGUGUUAGGGGUGGCGG
---------(((...)))..(((((((......)))))))...(((..((.(.((..(((..((((((((....))))))))..)))..))....).))..))). ( -42.90)
>DroMoj_CAF1 189692 94 + 1
-----------CUGACUUACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGAGCGAGCGGCGUCAAUGGCGGCGG
-----------.........((((((((....))))))))...(((((((((.((((((.((((((((.(....).))))).)))))))))))....))))))). ( -37.10)
>DroAna_CAF1 143844 102 + 1
AAUUAAAAAUCUCCACUCACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGUUGGGCCAAAGCCUGAUGGUGCUGGGCCAGCGGUGUGAGCG---GCGG
................((.((((((.......)))))).))..((((((((((.(((((((.(((..(((....)))..))).)))))))))).))))---))). ( -42.50)
>consensus
_________GAGACACUCACCGUUAUUAUUGCUGAUGGCGAAUCGCUGCUGCAGCUGCUGUGCCAGCGCCUGAUGAUGCUGGGCCAGCGGUGUCAGCGGUGGCGG
................((.((((((.......)))))).))..(((((((((.(((((((.(((((((.(....).))))).)))))))))....))))))))). (-31.44 = -32.03 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:07 2006